RetrogeneDB ID: retro_mmur_747

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_59:84972..86069(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KRT75
• Ensembl ID: ENSMICG00000002186
• Aliases: None
• Description: keratin 75 [Source:HGNC Symbol;Acc:24431]

Sequence

>retro_mmur_747
AGCAGCAGCTTCAGACATGGCCTGGGCATCGGCATGGGTCTGCATGGAGGCTATGCCAGGGCCATTGGTATAGGATGCAT
CCCAGCCATCATGGTGAACAATAGCCTGCTGAGTCCCCTCTAGCTGGAGGTGGACCCCAACATCCAGGCCGTGCGAAACC
AGGATAAAGAAGAGATCAAGACCCTCAACAAGAAGTTTGCCTCCTTCATTGACAAGATGCAGTTCCTGTAGCTGCAGAAC
AAGATGCTGGAGACCAAGTGGAGCCTCCTGCAGCAGCAGAAGATGGCTCAGAGCAACACGGACAGCATGTTTGAAAGCTA
CATCAACAACCTTCCTCCGGAGCTGTACTCACTGCGCCAGGACAAGCTGAAGCTGGAGGTAGAGTTTGGCAACATGCAGG
GGCTCGTGGAGGACTTCAAGAATAAGTATGAGGATGAGATCAACAAGCATACAGAGACAGGGAATGAATCTGTCCTCTTC
AAGAAAGATGTGGATGAAGCTCACATGAACAAAGTAGAGCTGGAGTCTCACCTGGAAGGGCTGGCTGATGAGATCAACTT
CCTCAGGCAGCTGAATGAAAAGGAGATCTGCGAGCTGCAGTCCCAGATCTCAGACATATCTGTGGTCTTGTCCAAGGACA
ACAGCCTTTCCCTGGATATGGATAACATCATCGCTGAGGTCCATGCCCAGTACAAGGAGATTGCCAACTGCAGCTGGTCT
GAGGCTGAAAGCATGTGCCAGACAAAGTATGAGGAGCTGCAGGTACTGGTTGGGAAGCACAAGGATGAACTGCAAAGCAC
CAAGATGGAGATCTCTGACATGAACAGGAATATTAGCCAGCTCCAGGCTGAGATCGAAGGTCTCAAAGGCTAGAGGACTT
CCCTGGAGACAGCCATTGCAGATGCTGAAAAGCATAGAGAGCTGGCCATTAAGAACACCAGTGCCAAGGTGGATGAGCTG
AATGCTGCCCTGCACAGAGCTAAGCAGTCATGGTGTGGCAGCTGCGGAAGTACCAGGAGCTGATGAACATCAAGCTGGCC
CTGGACATCGAGATCACCACCTACCACAAGCTGCTGGTGGGCAAGGACAGCCAGCTG

Alignment

ORF - retro_mmur_747 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.56 %
• Parental protein coverage: 66.73 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  NSGFGYGVGIG-GFGGPGFPACPPGGIQEVTVNQSLLAPLNLQIDPTIQRVRTEEREQIKTLNNKFASFI
          .S.F..G.GIG.G..G....A...G.I....VN.SLL.PL.L..DP.IQ.VR....E.IKTLN.KFASFI
Retrocopy SSSFRHGLGIGMGLHGGYARAIGIGCIPAIMVNNSLLSPL*LEVDPNIQAVRNQDKEEIKTLNKKFASFI

Parental  DKVRFLEQQNKVLETKWSLLQEQGTRSVRQNLEPLFDAYISDLRRQLESITNERGRLEAELRNMQDTVED
          DK..FL..QNK.LETKWSLLQ.Q.......N....F..YI..L...L.S.......LE.E..NMQ..VED
Retrocopy DKMQFL*LQNKMLETKWSLLQQQ--KMAQSNTDSMFESYINNLPPELYSLRQDKLKLEVEFGNMQGLVED

Parental  LKVRYEDEINKRTAAENEFVALKKDVDAAYMNKVELEAKVKSLADELNFHRLVFEAELSQMQTQVSDTSV
          .K..YEDEINK.T...NE.V..KKDVD.A.MNKVELE.....LADE.NF.R...E.E....Q.Q.SD.SV
Retrocopy FKNKYEDEINKHTETGNESVLFKKDVDEAHMNKVELESHLEGLADEINFLRQLNEKEICELQSQISDISV

Parental  VLSMDNNRNLDLDSIIAEVKAQYEDIANRSRAEAESWYQTKYEELQVTAGRHGDDLRNTKQEISEVNRMI
          VLS.DN...LD.D.IIAEV.AQY..IAN.S..EAES..QTKYEELQV..G.H.D.L..TK.EIS..NR.I
Retrocopy VLSKDNSLSLDMDNIIAEVHAQYKEIANCSWSEAESMCQTKYEELQVLVGKHKDELQSTKMEISDMNRNI

Parental  QRLRAEIDSVKKQCSSLQTAIADAEQRGELALKDARAKLVDLEEALQKAKQD-MARLLREYQELMNVKLA
          ..L.AEI...K....SL.TAIADAE...ELA.K...AK...L..AL..AKQ..M...LR.YQELMN.KLA
Retrocopy SQLQAEIEGLKG*RTSLETAIADAEKHRELAIKNTSAKVDELNAALHRAKQS<MVWQLRKYQELMNIKLA

Parental  LDVEIATYRKLLEGEESRL
          LD.EI.TY.KLL.G..S.L
Retrocopy LDIEITTYHKLLVGKDSQL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_747 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_747 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003743	10 retrocopies	retro_chof_1530, retro_chof_1645, retro_chof_2414, retro_chof_2471, retro_chof_2544, retro_chof_2704, retro_chof_322, retro_chof_693, retro_chof_750, retro_chof_915,
Microcebus murinus	ENSMICG00000002186	1 retrocopy	retro_mmur_747 ,
Microcebus murinus	ENSMICG00000002190	1 retrocopy	retro_mmur_1094,
Nomascus leucogenys	ENSNLEG00000017753	1 retrocopy	retro_nleu_1726,