RetrogeneDB ID: retro_mmur_711

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_4779:415389..415861(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000016210
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000012459
• Aliases: None
• Description: None

Sequence

>retro_mmur_711
CTACCATCTCCCCAGCCCACCATGGCAGATGAAATTGATTTCACTACTGGAGATGCTGGAGCTTCCAGCACTTACCCTAT
GCAGTGCTCGGCCCTGCGCAAAAAACGGCTTCGTGGTGCTCAAAGGACGACCATGCAAGATAGTAGAGATGTCAACTTCC
AAAACTGGAAAGCACGGTCATGCCAAGGTTCACCTTGTTGGAATTGATATTTTCACTGGCAAAAAATATGAAGATATTTG
CCCTTCTGCTCACAACATGGATGTTCCAAATATTAAGAGAAATGATTACCAACTGATATGCATTCAAGATGGTTACCTTT
CCCTGCTGACAGAAACTGGTGAAGTTCGTGAGGATCTTAAACTGCCAGAAGGTGAACTAGGCAAACAAATAGAAGGAAAA
TACAGTGCAGGTGAAGATGTACAGGTATCTGTCATGTGTGCAATGAGTGAAGAATATGCTGTAGCCATAAAA

Alignment

ORF - retro_mmur_711 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.75 %
• Parental protein coverage: 97.52 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LESKPLKMADDLDFETGDAGASATFPMQCSALR-KNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID
          L.S....MAD..DF.TGDAGAS.T.PMQCSALR.KNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID
Retrocopy LPSPQPTMADEIDFTTGDAGASSTYPMQCSALR>KNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID

Parental  IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEE
          IFTGKKYEDICPS.HNMDVPNIKRND.QLI.IQDGYLSLL...GEVREDL.LPEG.LGK.IE.KY..GE.
Retrocopy IFTGKKYEDICPSAHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELGKQIEGKYSAGED

Parental  ILITVLSAMTEEAAVAIK
          ....V..AM.EE.AVAIK
Retrocopy VQVSVMCAMSEEYAVAIK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_711 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_711 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000132507	3 retrocopies	retro_hsap_1788, retro_hsap_2004, retro_hsap_9,
Gorilla gorilla	ENSGGOG00000012032	2 retrocopies	retro_ggor_1448, retro_ggor_159,
Microcebus murinus	ENSMICG00000012459	1 retrocopy	retro_mmur_711 ,
Monodelphis domestica	ENSMODG00000006652	2 retrocopies	retro_mdom_1641, retro_mdom_190,