RetrogeneDB ID: retro_mmur_382

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2748:159065..160543(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COG5
• Ensembl ID: ENSMICG00000012878
• Aliases: None
• Description: component of oligomeric golgi complex 5 [Source:HGNC Symbol;Acc:14857]

Sequence

>retro_mmur_382
GGTCCTGGAGATCTACCATGCCAACCCCAGGAAATACTGCAGCATTTCGTGCTTCCCTCTGGACCAATATGGAGAAATTA
ATGGATCTTATTTGTTCTGTTTGTGGACAGGTACAACACCTACAAAAAGTATTGGTGAAAAAGAGAGATCCTGTCTCTCA
CATTTGTTTCATTGAAGAAATAATTAAGGACGGACAACCTGAAATTTTCTACACATTTTGGAATTCAGTTACTCAGGCAC
TTTCTTCTCAATTTCGTACAGCAACAGAGTCTTCGATGTTTTTGAAACAGGCATTTGAAGGAGAATACCCCAAACTGTTG
CGTCTTTGTAATGACTTATGGAAGCGTCTTCAACAATACAGTCAAAATATCCAAGGGAATTTTAGTGCAAGTGGAACTAC
AGACCTCTTTGTTGACCTACAACACATGGAAGATGATACACAAGATATATTCATACCAAAAAAACCAGATTATGATCCAG
AAAAGGCTTTGAAAGACTCACTGCAACCCTATGAGGCTGCTTACCTGTCAAAATCTTTATCGCAACTCTTTGATCCTATC
AACTTGGTTTTTCCCCCTGGTGGTCGTAATCCTCCTTCCTCTGATGAACTTGATGGTATCATTAAAACTATAGCAAGTGA
ACTAAATGTAGCTGCCGTTGATGCAAACCTCACATTAGCTGTGTCAAAAAATGTGGCAAAGACCATTCAGTTATATGGTG
TAAAATCAGAGCAGCTTCTTTCCACACAAGGAGATGCAAGTCAGGTGATTGGGCCTCTTACTGAAGGACAGAGAAGAAAT
GTGGCTATAGTGAATTCACTGTATAAGTTGCACCAATCAGTAACAAAGGTAGTTTCCAGTCAGAGCTCGTTCCCACCAGC
AGCTGAGCAAACTATAATTTCAGCCCTAAAGGTGATCCATGCTCTTATGGGAAATGCTGTGCAGCCCGTACTGACTTCAG
TGGGAGACGCTATAGAGGCCATAATCATCACCATGCATCAAGAAGATTTTTCTGGGTCATCATCCAGCTCAGGAAAGCTC
GATGTTCCTTGTTCTCTGTACATGAAGGAGCTACAAGGTTTCATTGCCAGAGTTATGAGTGACTACTTTAAACACTTTGA
ATGCTTAGATTTTGTCTTTGATAACACTGAAGCTATTGCCCAAAGAGCAATTGAACTTTTTATCCGCCATGCCAGTCTCA
TAAGACCTCTTGGTGAAGGTGGGGAGATGCGACTTGCCTCTGATTTTGCACAGATGGAGTTGGCTGTGGGTCCGTTCTGC
AGACGAGTTTCCAACTTGGGAAAGTCCGATCGAATGCTGAGGTCGTTCAGACCACTGCTCTTCCAGACAAGTGAAAATGT
GGCCAATAGCCCTACACTGGGGGACATCATTCCATTCAGCGTCATTATTCAGTTTCTGTTCTCGAGAGCACCTGCTGAGA
TGAAATCCCCTCTCCAGAAGGCCGAGTGGTCCCACGCA

Alignment

ORF - retro_mmur_382 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.76 %
• Parental protein coverage: 61.76 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GPG-RSTMPTPGNTAAFRASLWTNMEKLMDLICSVCGQVQHLQKVLAKKRDPVSHICFIEEIIKDGQPGI
          GPG.RSTMPTPGNTAAFRASLWTNMEKLMDLICSVCGQVQHLQKVL.KKRDPVSHICFIEEIIKDGQP.I
Retrocopy GPG<RSTMPTPGNTAAFRASLWTNMEKLMDLICSVCGQVQHLQKVLVKKRDPVSHICFIEEIIKDGQPEI

Parental  FYTFWNSVTQALFPQFRTATETSMFLKQAFEG-YPKLLRLCNDLWKRLQQYSQNIQGNFNASGTTDLFVD
          FYTFWNSVTQAL..QFRTATE.SMFLKQAFEG.YPKLLRLCNDLWKRLQQYSQNIQGNF.ASGTTDLFVD
Retrocopy FYTFWNSVTQALSSQFRTATESSMFLKQAFEGEYPKLLRLCNDLWKRLQQYSQNIQGNFSASGTTDLFVD

Parental  LQHMEDDTQDIFIPKKPDYDPEKALKDSLQPYEAAYLSKSLSRLFDPINLVFPPGGRNPPSSDELDGIIK
          LQHMEDDTQDIFIPKKPDYDPEKALKDSLQPYEAAYLSKSLS.LFDPINLVFPPGGRNPPSSDELDGIIK
Retrocopy LQHMEDDTQDIFIPKKPDYDPEKALKDSLQPYEAAYLSKSLSQLFDPINLVFPPGGRNPPSSDELDGIIK

Parental  TIASELNVAAVDANLTLAVSKNVAKTIQLYGVKSEQLLSTQGDASQVIGPLTEGQRRNVAVVNSLYKLHQ
          TIASELNVAAVDANLTLAVSKNVAKTIQLYGVKSEQLLSTQGDASQVIGPLTEGQRRNVA.VNSLYKLHQ
Retrocopy TIASELNVAAVDANLTLAVSKNVAKTIQLYGVKSEQLLSTQGDASQVIGPLTEGQRRNVAIVNSLYKLHQ

Parental  SVTKVVSSQSSFPPAAEQTII-ALKVIHALMGNAVQPLLTSVGDAIEAIIITMHQEDFSGSSSSSGKLDV
          SVTKVVSSQSSFPPAAEQTII.ALKVIHALMGNAVQP.LTSVGDAIEAIIITMHQEDFSGSSSSSGKLDV
Retrocopy SVTKVVSSQSSFPPAAEQTIISALKVIHALMGNAVQPVLTSVGDAIEAIIITMHQEDFSGSSSSSGKLDV

Parental  PCSLYMKELQGFIARVMSDYFKHFECLDFVFDNTEAIAQRAIELFIRHASLIRPLGEGGKMRLAADFAQM
          PCSLYMKELQGFIARVMSDYFKHFECLDFVFDNTEAIAQRAIELFIRHASLIRPLGEGG.MRLA.DFAQM
Retrocopy PCSLYMKELQGFIARVMSDYFKHFECLDFVFDNTEAIAQRAIELFIRHASLIRPLGEGGEMRLASDFAQM

Parental  ELAVGPFCRRVSNLGKSYRMLRSFRPLLFQTSENVANSPTLGDIIPFSIIIQFLFSRAPAEMKSPLQKAE
          ELAVGPFCRRVSNLGKS.RMLRSFRPLLFQTSENVANSPTLGDIIPFS.IIQFLFSRAPAEMKSPLQKAE
Retrocopy ELAVGPFCRRVSNLGKSDRMLRSFRPLLFQTSENVANSPTLGDIIPFSVIIQFLFSRAPAEMKSPLQKAE

Parental  WSHA
          WSHA
Retrocopy WSHA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_382 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_382 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000012878	1 retrocopy	retro_mmur_382 ,