RetrogeneDB ID: retro_mmur_357

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2597:1354338..1354632(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GOLGA7B
• Ensembl ID: ENSMICG00000000199
• Aliases: None
• Description: golgin A7 family, member B [Source:HGNC Symbol;Acc:31668]

Sequence

>retro_mmur_357
AGGCCACACCAGGTGACCGGGAAGGTGTTCATTCAGCGAGACTACAGCAGTGGCACCCGCTGCCAGTTCCAGACCAAGTT
CCCCGCGGAGCTGGAGGACCGGATTGATAGGCAGCAGTTTGAAGAAACAGTTCGAACTCTAAATAACCTGTATGCAGAAG
CTGAGAAGCTTGGGGGCCAATCCTACCTATAAGGCTGTTTGGCTTGTTTAACAGCATATACCATTTTCCTACGCATGGAA
ACTCATTATGAGAAGGTTCTGAAGAAAGTCTCCAAATACATTCAAGACAAGAGC

Alignment

ORF - retro_mmur_357 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.45 %
• Parental protein coverage: 58.68 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RSASLATKVFIQRDYSDGTICQFQTKFPPELDSRIERQLFEETVKTLNGFYAEAEKIGGSSYLEGCLACA
          R......KVFIQRDYS.GT.CQFQTKFP.EL..RI.RQ.FEETV.TLN..YAEAEK.GG.SYL.GCLAC.
Retrocopy RPHQVTGKVFIQRDYSSGTRCQFQTKFPAELEDRIDRQQFEETVRTLNNLYAEAEKLGGQSYL*GCLACL

Parental  TAYFIFLCMETHYEKVLKKISRYIQEQN
          TAY.IFL.METHYEKVLKK.S.YIQ...
Retrocopy TAYTIFLRMETHYEKVLKKVSKYIQDKS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_357 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_357 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000015475	1 retrocopy	retro_dord_497,
Macropus eugenii	ENSMEUG00000001446	2 retrocopies	retro_meug_1793, retro_meug_276,
Microcebus murinus	ENSMICG00000000199	1 retrocopy	retro_mmur_357 ,
Microcebus murinus	ENSMICG00000000940	1 retrocopy	retro_mmur_721,