RetrogeneDB ID: | retro_mmur_1556 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_821:338553..338820(-) | ||
| Located in intron of: | ENSMICG00000016665 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CHP1 | ||
| Ensembl ID: | ENSMICG00000014362 | ||
| Aliases: | None | ||
| Description: | calcineurin-like EF-hand protein 1 [Source:HGNC Symbol;Acc:17433] |
Retrocopy-Parental alignment summary:
>retro_mmur_1556
GAAAATTTTCTGCGGATTCCAGAACTTGCCATCAACCAACTGGGGAACTGGATCGTCAGTGCTTTTTTTCCAGATGGGGA
GGACCGGGTGAACTTCTGTGGATTCATAAGAACCTTGGTTCATTTCTGAACAAATGATGATGACGACAAGAGCAAGGGTG
GGAATGGAGTAGAACCACTGAACAGCCAAAGCAACAAACTGCACTTTGCTTTTCGACAATATGATTTGTATGAAGATGCC
AAGATCTCCCACGGTGAGCTGTTACAG
ORF - retro_mmur_1556 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 68.54 % |
| Parental protein coverage: | 64.96 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | EDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFA |
| E.F.RIPELAIN.LG..I..AFFP.GED.VNF.GF.RTL.HF....D..KSK..NG.EPLNS.SNKLHFA | |
| Retrocopy | ENFLRIPELAINQLGNWIVSAFFPDGEDRVNFCGFIRTLVHF*TNDDDDKSKGGNGVEPLNSQSNKLHFA |
| Parental | FRLYDLDKDDKISRDELLQ |
| FR.YDL..D.KIS..ELLQ | |
| Retrocopy | FRQYDLYEDAKISHGELLQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1556 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1556 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000014362 | 1 retrocopy |
retro_mmur_1556 ,
|
| Oryctolagus cuniculus | ENSOCUG00000013832 | 1 retrocopy |