RetrogeneDB ID: | retro_mmur_123 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | GeneScaffold_1351:537275..537692(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | LACTB2 | ||
| Ensembl ID: | ENSMICG00000012370 | ||
| Aliases: | None | ||
| Description: | lactamase, beta 2 [Source:HGNC Symbol;Acc:18512] |
Retrocopy-Parental alignment summary:
>retro_mmur_123
ATGACTGCCACATTGCAGTGCATAGAACCCCTGTCCAGTCGAGTGGTGCGTGTGTTGAATTGTAACCCGGGTCTTGTCAC
CCTGCAGGGCACCAACGCCTACCTAGTGAGGACTGGCCCTAGGAAAATCCTCATTGACACTGGAGAACCAGCAATTCTAG
AATATATCAGCTGTTTAATGTAGGCTCTAACTGAATTTACCATCGCAATCCAAGAAATCACAGTGAGTAATTGGCACCAG
GATTGTTCTGGTGGCATAGGAGATATGAAAGCATCACTAATGACACTATCTATTGTATTAAAAAAATCATAGAGGAATCC
CCATAGAGAGTAAATTATAGGAAATGGAGAGCAACAATATGTTTTTCTGAAAAATAGAGATGTAATTAGGACTGAGGGAA
CCACTCTAAGAGTTGTC
ORF - retro_mmur_123 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 67.14 % |
| Parental protein coverage: | 71.07 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MAAVLQRVERLSSRVVRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLKQALTEFNTAI |
| M.A.LQ..E.LSSRVVRVL.CNPG..TLQGTN.YLV.TGPR.ILIDTGEPAI.EYISCL..ALTEF..AI | |
| Retrocopy | MTATLQCIEPLSSRVVRVLNCNPGLVTLQGTNAYLVRTGPRKILIDTGEPAILEYISCLM*ALTEFTIAI |
| Parental | QEIIVTHWHRDHTGGIEDICKSISNDTTYCIKKLPRNPHREEIIGNGEQQYVYMKDGDIIKTEGATLRVI |
| QEI.V..WH.D..GGI.D...S.........KK..RNPHRE.IIGNGEQQYV..K..D.I.TEG.TLRV. | |
| Retrocopy | QEITVSNWHQDCSGGIGDMKASLMT-LSIVLKKS*RNPHRE*IIGNGEQQYVFLKNRDVIRTEGTTLRVV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_123 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_123 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000012370 | 1 retrocopy |
retro_mmur_123 ,
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