RetrogeneDB ID: retro_mmur_1106

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_22752:8904..9476(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPL3
• Ensembl ID: ENSMICG00000009524
• Aliases: None
• Description: mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:10379]

Sequence

>retro_mmur_1106
ATGCGGGGTTGGAGGCTGCTAACGCAGGCAGGTGCCCAGGTGTTGGGTCGCAGCTCTGGCAGCCTGAGTGCCGCCCTCCC
CCCCCCCTCAGGGAACAGAACAAACATCTGGCTTTTTTTAGAAGTCTCCGTGGCAAGAATGGTACTTGGTGGGATGAGCA
TCTTTCTGAAGAAAATGTCCCATTTGTTAAGCAGTTAGTTTCCAATGAAGATAAAGTCCAGTTAGCGAGTAAACTATGTC
CTCTGCAAGATGAACCATGGCCTATACAGCCTTGGGAACCAGGTTCCTCTAGAGTTGGCCTTATTGCCTTGAAGCTGGGT
ATGATGCCTTTATGGACTAAAGATGGTCAAAAGCACGTGGTCACGTTACTTCAGGTACAAGACTGTCATGTTATAAAATA
TACTTCAAAGGAAAATCATAACGGAAAAATGGCAGCCCTACATGCAGGAGGAAAAACTGCATCACGTTTCCGTAAACCAA
CATCTGTATTGGAATTTTACTGAGAACTTGGATTACTGCCAAAACAGAAAGTTCAAATCTTTCGTGTAACAGATAATGCT
GTAATTAAGCCA

Alignment

ORF - retro_mmur_1106 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.54 %
• Parental protein coverage: 54.31 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MPGWRLLTQAGAQVLGRGSGCLGAAPG--SGNRTNIWLFV-RNLHGKSGTWWDEHLSEENVPFVKQLVSD
          M.GWRLLTQAGAQVLGR.SG.L.AA....SGNRTNIWLF..R.L.GK.GTWWDEHLSEENVPFVKQLVS.
Retrocopy MRGWRLLTQAGAQVLGRSSGSLSAAXXXXSGNRTNIWLFL<RSLRGKNGTWWDEHLSEENVPFVKQLVSN

Parental  EDKAQLASKLCPLKDEPWPIQPWEPGSSRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVIKYTSKEN
          EDK.QLASKLCPL.DEPWPIQPWEPGSSRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVIKYTSKEN
Retrocopy EDKVQLASKLCPLQDEPWPIQPWEPGSSRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVIKYTSKEN

Parental  HNGKMAALHVGGKTVSRFRKPTSVLEFYRELGLPPKQKVKIFHVTDNAVIKP
          HNGKMAALH.GGKT.SRFRKPTSVLEFY.ELGL.PKQKV.IF.VTDNAVIKP
Retrocopy HNGKMAALHAGGKTASRFRKPTSVLEFY*ELGLLPKQKVQIFRVTDNAVIKP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1106 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1106 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000021216	1 retrocopy	retro_cpor_324,
Dasypus novemcinctus	ENSDNOG00000014498	1 retrocopy	retro_dnov_178,
Homo sapiens	ENSG00000114686	1 retrocopy	retro_hsap_1236,
Gorilla gorilla	ENSGGOG00000011128	1 retrocopy	retro_ggor_969,
Microcebus murinus	ENSMICG00000009524	1 retrocopy	retro_mmur_1106 ,
Ochotona princeps	ENSOPRG00000000501	1 retrocopy	retro_opri_589,
Pan troglodytes	ENSPTRG00000015396	1 retrocopy	retro_ptro_850,
Sus scrofa	ENSSSCG00000011179	1 retrocopy	retro_sscr_126,