RetrogeneDB ID: | retro_mmul_775 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 1099553000011:8729..9036(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GAGE10 | ||
| Ensembl ID: | ENSMMUG00000002333 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_mmul_775
AGGAAGATCAATCAGCCTAGACCAACACAATTTGTACAACCTGAGGTGACCTGGCCTATTCTGCCCAAGCAGTTCAGTTA
TGAACCACCTGAAGTGGAACCACCAACTCAAAGACAGGATCCTTCACCTGCTCAGGAGAGAAAGGATGAGGGAGCATCTG
CAGCTCAAAGGCCTGAGCTGGAAGCCGATGGGCCAGGAACTGGTTCAGATGAAGACTGGGTATGAGCGTGGAGATGGTCC
TGATGTGAAGGGGATGTGCCTGCCAAACTCAGAGCCTGGGAAACTGCCAGAAAGTGAAAAGCAATCA
ORF - retro_mmul_775 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 64.42 % |
| Parental protein coverage: | 92.73 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | RSTYRRRPRRYVEPPEMIGPMLEKGLE-TPEKLEPPTQSQDPAPAQERKDKGASAAQGPELQADS-QELV |
| R.....RP...V.P.E...P.L.K.....P...EPPTQ.QDP.PAQERKD.GASAAQ.PEL.AD..QELV | |
| Retrocopy | RKINQPRPTQFVQP-EVTWPILPKQFSYEPPEVEPPTQRQDPSPAQERKDEGASAAQRPELEADG>QELV |
| Parental | QLKTGCERGDGPDVKGMCLSNPEPGKLPEEGRQS |
| Q.KTG.ERGDGPDVKGMCL.N.EPGKLPE...QS | |
| Retrocopy | QMKTGYERGDGPDVKGMCLPNSEPGKLPESEKQS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 0 .11 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .16 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM | 0 .12 RPM |
| SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
| SRP007412_testis | 0 .11 RPM | 6 .52 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_775 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_775 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_775 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macaca mulatta | ENSMMUG00000002333 | 2 retrocopies |
retro_mmul_758, retro_mmul_775 ,
|