RetrogeneDB ID: | retro_mmul_447 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 1:195554576..195555094(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CA14 | ||
| Ensembl ID: | ENSMMUG00000021385 | ||
| Aliases: | None | ||
| Description: | carbonic anhydrase 14 precursor [Source:RefSeq peptide;Acc:NP_001244832] |
Retrocopy-Parental alignment summary:
>retro_mmul_447
ATGTTGTTCTTCATCATCTTGCTAGAGGTGATTTGGATCCTGGCTGCAGATGAGGGTCAACACTGGACATATGAGTGCCC
ACATGGTCAGGACCACTGGCCAGCCTCTTACTCTGAAGTGTGGAAACAATACACAGTCCCCCTTCAATATCCAGACAGTG
CGACGATTGACCCTTAGATGACTGCTCTGCAGCTCCATGGATATGACTGGCCTGGCACTGAGCCTTTAGACCTGCACAAG
AATAGCTACACAATGCAACTGTCTCTGCCCTCTACCCTGTATCTAAGTGGACTTTCCAGAAAATATGTAGCTACCCAGCT
CCACCTGCACTGGGGCCAGGATGATCCCCAGGGGGCTCAGAACACCAGATCAACAGTGAAGCCACAGTTACTGAGCTCCG
CATCATGCATTATGACTCTGATTCCTGTGATAGCTTGAGTGAAGCCGCTCAGAGGCCTCAGGGCCTGACTGTCCTAGGCA
TCCTAATTGAGGTGAGTGAGACTAAGAATATAGCTTAT
ORF - retro_mmul_447 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 76.57 % |
| Parental protein coverage: | 51.63 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MLFSALLLEVIWILAADGGQHWTYEGPHGQDHWPASYPECGNNAQSPIDIQTDSVTFDPDLPALQPHGYD |
| MLF...LLEVIWILAAD.GQHWTYE.PHGQDHWPASY.E.......P.....DS.T.DP...ALQ.HGYD | |
| Retrocopy | MLFFIILLEVIWILAADEGQHWTYECPHGQDHWPASYSEVWKQYTVPLQYP-DSATIDP*MTALQLHGYD |
| Parental | QPGTEPLDLHNNGHTVQLSLPSTLYLGGLPRKYVAAQLHLHWGQKG-SPGGSEHQINSEATVAELHIVHY |
| .PGTEPLDLH.N..T.QLSLPSTLYL.GL.RKYVA.QLHLHWGQ...SPGGSEHQINSEATV.EL.I.HY | |
| Retrocopy | WPGTEPLDLHKNSYTMQLSLPSTLYLSGLSRKYVATQLHLHWGQDD<SPGGSEHQINSEATVTELRIMHY |
| Parental | DSDSYDSLSEAAQRPQGLAVLGILIEVGETKNIAY |
| DSDS.DSLSEAAQRPQGL.VLGILIEV.ETKNIAY | |
| Retrocopy | DSDSCDSLSEAAQRPQGLTVLGILIEVSETKNIAY |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 1 .12 RPM | 4 .15 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .63 RPM | 1 .59 RPM |
| SRP007412_cerebellum | 1 .16 RPM | 2 .58 RPM |
| SRP007412_heart | 0 .41 RPM | 3 .83 RPM |
| SRP007412_kidney | 1 .41 RPM | 1 .64 RPM |
| SRP007412_liver | 1 .19 RPM | 5 .74 RPM |
| SRP007412_testis | 0 .79 RPM | 0 .00 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_447 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_447 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_447 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macaca mulatta | ENSMMUG00000021385 | 1 retrocopy |
retro_mmul_447 ,
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