RetrogeneDB ID: | retro_mmul_2513 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | X:82310122..82310490(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSMMUG00000016109 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_mmul_2513
GGTAAAAATGCAGAGCTGGAGTCGTGTTCCCTTCTCGCTTGGGAACTCCCGTCTCGCCTCGGGTTGCAATGGACCCCAAC
TGCTCCTGAGCCGCTGGTTTCTCCTGTGCCTGCGCCGGCTCCTGCAAGTGGAAAGAGTGCAAATGCACCTCCTGCAAGAA
GAGCTGTTGCTCCTGCTGCCTTGTGGGCTGTGCCAAGTGTGCCCAGGTCTACATCTGCAAAGGGGCTTTGGAGAAGTGCA
GCGGCTGCACCTGATGTCGGTTCAGCCCTGCTCCCAAGTATAAATAGAGTGACCCGTAAAATCCAGGATTTTTTGGTTTT
TGATACAACCTTAACCCATTTGCTACATTCCTTTTTCTGTGAAATATG
ORF - retro_mmul_2513 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 66.13 % |
| Parental protein coverage: | 90.98 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | GSNAP-SSCLTPSSPLPSSLGWKWTPTAPAPLEPPAPVPAPASAKSANAPRARRAAAPAAPWAVPSVPRA |
| G.NA...SC......LPS.LG..WTPTAP.PL..P.P.PAPAS.KSANAP.ARRA.APAA.WAVPSVPR. | |
| Retrocopy | GKNAELESCSLLAWELPSRLGLQWTPTAPEPLVSPVPAPAPASGKSANAPPARRAVAPAALWAVPSVPRS |
| Parental | ASAKGHRRSAAAVPDVGTALLPDVNRATCTNLD-FFFL-YNPEPFATFVFLLNM |
| .SAKG..RSAAA.PDVG.ALLP..NR.T....D.F.FL.YN..PFATF.FL.NM | |
| Retrocopy | TSAKGLWRSAAAAPDVGSALLPSINRVTRKIQD>FWFL>YNLNPFATFLFL*NM |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 0 .45 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .24 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 0 .19 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .29 RPM |
| SRP007412_kidney | 0 .00 RPM | 3 .05 RPM |
| SRP007412_liver | 0 .00 RPM | 0 .71 RPM |
| SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2513 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2513 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_2513 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 3 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macaca mulatta | ENSMMUG00000016109 | 2 retrocopies |
retro_mmul_1207, retro_mmul_2513 ,
|
| Procavia capensis | ENSPCAG00000007865 | 1 retrocopy | |
| Pteropus vampyrus | ENSPVAG00000016198 | 1 retrocopy |