RetrogeneDB ID: | retro_mmul_1689 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 3:77131424..77132699(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CDC7 | ||
| Ensembl ID: | ENSMMUG00000011010 | ||
| Aliases: | None | ||
| Description: | cell division cycle 7-related protein kinase [Source:RefSeq peptide;Acc:NP_001253539] |
Retrocopy-Parental alignment summary:
>retro_mmul_1689
TCCTTTCAAGAAGTACGGGAATATATGTTTAATCTGTTCAAAGCTTTGAAACGCATCCATCAGTTTGGTATTGTTCACCG
TGATGTTAAGCCCAGCAATTTTTTATATAATAGGCGCTTGAAAAAGTATGCCTTGGTAGACTTTGGTTTGGCCCAAGGAA
CCCATGATATTAAAATAGAGCTTTTCAAATTTGTCCAGTCTGAAGCTCAGCAGGAAAGGTGTTCACAAAACAAATCCCAT
ATAATCACAGGAAACAGGATTCCATTGAGTGGCCCAGTACCTAAGGATCTGGATCAGCAGTCCACCACAAAAGCTTCTGT
TAAAAGACCCTGCACAAAGGCACAAATTCAGATTAAACAAGGAAAAGATGGAAAGGAGGGATCTGTAGGCCTTTCTGTCC
AGCGCTCTGTTTTTGGAAAAAGAAATTTCAATATACACAGCTCCATTTCACATGAGAGCCCTGCAGTGAAACTCATGAAG
CAGTCAAAGACTGTGGATGTACTGTCTAGAAAGTTAGCAACAAAAAAGAAGGTTATTTCTGCAAAAGTTATGAATAGTGG
TGTGATGAGGAAAGCTGCCAGTTCTTGCCCGGCTAGCCTGACCTGTGACTGCTATGCAACAGATAAAGTTTGTAGTATTT
GCCCTTCAAGGCGTCAGCAGGTTGCCCCTAGGGCAGGTACACCAGGATTCAGAGCACCAGAGGTCTTGACAAAGTGCCCC
AATCAAACTACAGCAATTGACATGTGGTCTGCAGGTGTCATATTTCTTTCTTTGCTTAGTGGACGATACCCATTTTATAA
AGCAAGTGATGATTTAACTGCTTTGGCCCAAATTATGACAATTCAGGGATCCAGAGAAACTATGCAAGCTGCTAAAACTT
TTGGGAAATCAATATTATGTAGCAAAGAAGTTCCAGCACAAGACTTGAGAAAACTCTGTGAGAGACTCAGGGGTATGGAT
TCCAACACTCCCAAGTAAACAAGTGATATACAAGGGCCTACTTCTCATCAACCAACTATTTCAGAGAAGACTGACCATAA
AGCTTCTCGCCTCGTACAAACACCTCCAGGACAATACTCAGGGAATTCATTTAAAAAGGGGGATAGTAATAGCTGTGGGT
GTTGTTTTGATGAGTATACTACCAATTTAGAAGGCTGGAATGAGGTACCTGATGAAGCTTATGACCTACTTGATAAACTG
CTAGATCTAAATCCAGCTTCAAGAATAACAGCAGAAGAAGTTTTGTTGCATCCATTTTTTAAAGATATGAGCTTG
ORF - retro_mmul_1689 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 95.76 % |
| Parental protein coverage: | 74.04 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | SFQEVREYMFNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQ |
| SFQEVREYMFNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHD.KIEL.KFVQSEAQ | |
| Retrocopy | SFQEVREYMFNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDIKIELFKFVQSEAQ |
| Parental | QERCSQNKSHIITGNKIPLSGPVPKELDQQSTTKASVKRPYTNAQIQIKQGKDGKEGSVGLSVQRSVFGE |
| QERCSQNKSHIITGN.IPLSGPVPK.LDQQSTTKASVKRP.T.AQIQIKQGKDGKEGSVGLSVQRSVFG. | |
| Retrocopy | QERCSQNKSHIITGNRIPLSGPVPKDLDQQSTTKASVKRPCTKAQIQIKQGKDGKEGSVGLSVQRSVFGK |
| Parental | RNFNIHSSISHESPAVKLMKQSKTVDVLSRKLATKKKTISAKVMNSGVMRKTASSCPTSLTCDCYATDKV |
| RNFNIHSSISHESPAVKLMKQSKTVDVLSRKLATKKK.ISAKVMNSGVMRK.ASSCP.SLTCDCYATDKV | |
| Retrocopy | RNFNIHSSISHESPAVKLMKQSKTVDVLSRKLATKKKVISAKVMNSGVMRKAASSCPASLTCDCYATDKV |
| Parental | CSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMT |
| CSIC.SRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMT | |
| Retrocopy | CSICPSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMT |
| Parental | IRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSNTPKLTSDIQGPASHQPTVSEKTDHKASR |
| I.GSRET.QAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSNTPK.TSDIQGP.SHQPT.SEKTDHKASR | |
| Retrocopy | IQGSRETMQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSNTPK*TSDIQGPTSHQPTISEKTDHKASR |
| Parental | LIQTPPGQYSGNSFKKGDSNSCGCCFDEYTTNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEALLHPFF |
| L.QTPPGQYSGNSFKKGDSNSCGCCFDEYTTNLEGWNEVPDEAYDLLDKLLDLNPASRITAEE.LLHPFF | |
| Retrocopy | LVQTPPGQYSGNSFKKGDSNSCGCCFDEYTTNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEVLLHPFF |
| Parental | KDMSL |
| KDMSL | |
| Retrocopy | KDMSL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 9 .52 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .65 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 10 .40 RPM |
| SRP007412_heart | 0 .00 RPM | 1 .88 RPM |
| SRP007412_kidney | 0 .00 RPM | 3 .76 RPM |
| SRP007412_liver | 0 .00 RPM | 1 .19 RPM |
| SRP007412_testis | 0 .04 RPM | 34 .90 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1689 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1689 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1689 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000006454 | 1 retrocopy | |
| Macaca mulatta | ENSMMUG00000011010 | 1 retrocopy |
retro_mmul_1689 ,
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