RetrogeneDB ID: | retro_mmul_109 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 3:181563795..181564602(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMMUG00000013320 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MMU.18991 | ||
| Ensembl ID: | ENSMMUG00000000531 | ||
| Aliases: | None | ||
| Description: | olfactory receptor 2A2 [Source:RefSeq peptide;Acc:NP_001180907] |
Retrocopy-Parental alignment summary:
>retro_mmul_109
ATGATCTTGGGACTCATCTGTCTGGACCACAGTCTGCACACCCCCATGTACTTCTTCCTCTCACACCTGGCCGTCATTGA
CATGTCCTATGCTTCCAACAATGTTCCCAAGATGTTGGCAAATCTGATGAACAAGAAAAGAACCATCTCCTTTGTTCCAT
GCATAATGCAGACTTTTTTGTATTTCGCTTTTGCTGCTACAGAGTGTCTGATTTTGGTGGTGATGTCCTATGATAGGTAT
GTGGCCATCTGTCACCCTCTCCAGTACACTGTCATCATGAGCTGGAGAGTGTGCACAATCCTGGCTCTCATGTCCTGGTC
ATGTGGGTTTGCTCTGTCCTTGGTACATGCAATTCTCCTTCTAAGGTTGCCCTTCTGTGGGCCCTGGGATGTGAACCACC
TCTTCTGTGAAATTCTGTCTGTCCTCAAGCTGGCCTGTGCTGACACCTGGGTTAACCAAGTGGTCATATTTACTACCTGT
GTGTTTGTCTTAGTCGGGCCTCTTTGTTTGATGCTTGTCTCCTACATGCACATCATCGGGGCCATCCTGAAGATCCAGAC
AAAGGAGGGCCGCATAAAGGCCCTCTCCACCTGCTCCTCCCACCTGTGTGTGGTTGGACTCTTCTTTGGCATAGCCATGG
TGGTTTACATAGTCCCAGACTCTAATCAACGAGAGGAGCAGGAGAAAATGCTGTCCCTGTTTCACAGTCTCTTTAACCCA
ATGCTGAATCCCCTGATCTACAGCCTGAGGAACGCTCAGGTGAAGGGCGCCCTCCACAGAGCACTGCAGAGGACGCAGTC
TATGTAA
ORF - retro_mmul_109 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 89.18 % |
| Parental protein coverage: | 86.45 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | IILGLICLDSRLHTPMYVFLSHLAIVDMSYASSTVPKMLANLVMHKKVISFAPCILQTFLYLAFAITECL |
| .ILGLICLD..LHTPMY.FLSHLA..DMSYAS..VPKMLANL...K..ISF.PCI.QTFLY.AFA.TECL | |
| Retrocopy | MILGLICLDHSLHTPMYFFLSHLAVIDMSYASNNVPKMLANLMNKKRTISFVPCIMQTFLYFAFAATECL |
| Parental | ILVVMSYDRYVAICHPLQYTVIMSWRVCTILALTSWSCGFALSLVHAILLLRLPFCGPQDVNHLFCEILS |
| ILVVMSYDRYVAICHPLQYTVIMSWRVCTILAL.SWSCGFALSLVHAILLLRLPFCGP.DVNHLFCEILS | |
| Retrocopy | ILVVMSYDRYVAICHPLQYTVIMSWRVCTILALMSWSCGFALSLVHAILLLRLPFCGPWDVNHLFCEILS |
| Parental | VLKLACADTWVNQVFIFATCVFVLVGPLSLILVSYTHIVGAILKIQTKEGRIKALSTCSSHLCVVGLFFG |
| VLKLACADTWVNQV.IF.TCVFVLVGPL.L.LVSY.HI.GAILKIQTKEGRIKALSTCSSHLCVVGLFFG | |
| Retrocopy | VLKLACADTWVNQVVIFTTCVFVLVGPLCLMLVSYMHIIGAILKIQTKEGRIKALSTCSSHLCVVGLFFG |
| Parental | IAMVVYMVPDSNQREEQEKMLSLFHSLFNPMLNPLIYSLRNAQVKGALHRALQRKRPM |
| IAMVVY.VPDSNQREEQEKMLSLFHSLFNPMLNPLIYSLRNAQVKGALHRALQR...M | |
| Retrocopy | IAMVVYIVPDSNQREEQEKMLSLFHSLFNPMLNPLIYSLRNAQVKGALHRALQRTQSM |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 0 .11 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 0 .00 RPM |
| SRP007412_cerebellum | 0 .06 RPM | 0 .00 RPM |
| SRP007412_heart | 0 .47 RPM | 0 .06 RPM |
| SRP007412_kidney | 0 .23 RPM | 0 .12 RPM |
| SRP007412_liver | 0 .08 RPM | 0 .00 RPM |
| SRP007412_testis | 0 .04 RPM | 0 .00 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_109 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_109 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_109 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macaca mulatta | ENSMMUG00000000531 | 3 retrocopies |
retro_mmul_109 , retro_mmul_1652, retro_mmul_1738,
|