RetrogeneDB ID: retro_mluc_400

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429847:2976175..2977024(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000027806
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000005161
• Aliases: None
• Description: None

Sequence

>retro_mluc_400
CTGGATAATAGTTTGGAGTCACCACACGCTATGGACATGTTAATTGTGTTGGAAGACGAAAAGCCAGTGAGTGTTACTGA
AATCCCAGACTGCCACGAGGACATTCACACATACCTCAGGGAGATGGAGATTAAATGTAAGCCTAAAGTGGGCTACATGA
AGAAGCAGCCGGCCATCAACAACAGCATGAGGGCTATCCTTGTGGACTGGTTAGTGAAAGTAGGAGAAGAGTTTAGACTA
CAGAATGAGACCCTGCACTTGGCTGTGAACTACATCGACAGGTTCCTTTCCTCCATGTCTGTGCTCAAAGGAAAATTTCA
GCTGGTGGGCACTGCTGCTATGCTGTTAGCCTCAAAGTTTGAAGAAATATACCCCCCAAAGGTTGCAGAGTTTGTGTACA
TTACAGATTATACCTACACCAAGAAACAAGTTCTGCGAATGGAGCACCTCGTTCTGAGAGTCCTTTCTTTTGACTTAGCG
GCACCAACTGTCAATCAGTTCCTCACCCAGTACTTTCTGCACCAGCAGCCTTCCAACTGCAAAGTTGAAAGTTTAGCGAT
GTTTCTGGGAGAGTTAAGTTTGATAGATGCTGACCCCTACCTTAAGTATTTGCCATCAGTTATTGCCGGAGCGGCCTTTC
ATCTAGCACTCTACACAGTCACAGGACAAAGCTGGCCTGAATCCTTGGCACAGAAGACGGGCTACACCCTGGAGAGTCTG
AAGCCCTGTCTCCTGGACCTGCACCAGACCTACCTCAGAGCGCCGCAGCACGCGCAGCAGTCCATCAGAGAAAAGTACAA
ACATTCCAAGTATCATGGTGTTTCTCTCCTCATCCCACCAGAGACACTA

Alignment

ORF - retro_mluc_400 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.99 %
• Parental protein coverage: 66.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEDSLESPHAMDMSIVLEEEKPVSVTEVPDYHEDIHTYLREMEIKCKPKAGYMKKQPDINNSMRAILVDW
          ...SLESPHAMDM.IVLE.EKPVSVTE.PD.HEDIHTYLREMEIKCKPK.GYMKKQP.INNSMRAILVDW
Retrocopy LDNSLESPHAMDMLIVLEDEKPVSVTEIPDCHEDIHTYLREMEIKCKPKVGYMKKQPAINNSMRAILVDW

Parental  LVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYT
          LV.VGEE..LQNETLHLAVNYIDRFLSSMSVL.GK.QLVGTAAMLLASKFEEIYPP.VAEFVYITD.TYT
Retrocopy LVKVGEEFRLQNETLHLAVNYIDRFLSSMSVLKGKFQLVGTAAMLLASKFEEIYPPKVAEFVYITDYTYT

Parental  KKQVLRMEHLVLKVLSFDLAAPTVNQFLTQYFLHQQPSNCKVESLAMFLGELSLIDADPYLKYLPSVIAG
          KKQVLRMEHLVL.VLSFDLAAPTVNQFLTQYFLHQQPSNCKVESLAMFLGELSLIDADPYLKYLPSVIAG
Retrocopy KKQVLRMEHLVLRVLSFDLAAPTVNQFLTQYFLHQQPSNCKVESLAMFLGELSLIDADPYLKYLPSVIAG

Parental  AAFHLALYTVTGQSWPESLAQKTGYTLESLKPCLLDLHQTYLRAPQHAQQSIREKYKHSKYHGVSLLIPP
          AAFHLALYTVTGQSWPESLAQKTGYTLESLKPCLLDLHQTYLRAPQHAQQSIREKYKHSKYHGVSLLIPP
Retrocopy AAFHLALYTVTGQSWPESLAQKTGYTLESLKPCLLDLHQTYLRAPQHAQQSIREKYKHSKYHGVSLLIPP

Parental  ETL
          ETL
Retrocopy ETL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_400 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000004943	1 retrocopy	retro_btau_1335,
Macropus eugenii	ENSMEUG00000000128	1 retrocopy	retro_meug_32,
Myotis lucifugus	ENSMLUG00000005161	1 retrocopy	retro_mluc_400 ,
Myotis lucifugus	ENSMLUG00000012856	1 retrocopy	retro_mluc_1020,
Monodelphis domestica	ENSMODG00000018931	1 retrocopy	retro_mdom_1309,
Oryctolagus cuniculus	ENSOCUG00000028042	1 retrocopy	retro_ocun_169,