RetrogeneDB ID: retro_mluc_2152

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430063:587767..588691(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025820
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000012093
• Aliases: None
• Description: None

Sequence

>retro_mluc_2152
AGAGAGAGAGTGGGGAGGACACGCATGACTATCCTACAGAGCAAGGGCAAGGCCTTTGCCAAGGATGTTTTTGCAATTCT
TCAGTCTGTGGAAGCCAGAGAAAAAGGGCCCGCGCCTCAAAAGCGACCGGCCCCCCGTGCAGCACCTGCGGCTCCCACCT
TGCCTACCACACAGCCTATCCCAGCTGCCTACGACAGGTATGACCAGGAACGATTCAAAAGAAAACAAGAAACGGGAGGC
TTCCACATTGACACGATGGGCACCTACCATGGGAAGACGCTGGAGTCCGTGACGCTAGAGGGTGCGGCGACCCGTGACAC
TCAGACTCCCGCTGCACAGCCAGTGCCAGTGCCCAGGCCAGTTTCTCAGGCCAGACCTCCCCCGAATCAGAAGAAAGGCT
CTCGGACACCCATCATCATCATCCCTGCGGCCGCCACCTCTCTCATAACCATGCTGAATGCCAAGGACCTCCTGCAGGAC
CTGACGTTTGTCCCATCCGATGAGAAGAAGAAACAGAGCTGCCGACGAGAGAATGAAACGCTGATACAGAGAAGAAAGGA
CCGGGTGCAGCCCAGGGGCACCGCGCTAGGCCTCACGGTGCCCTACAGAGTCGTGGACCAGCCTCTGAAACTCACGCCTC
AAGACTGGGACCAGGTGGTGGCCGTCTTCGTGCACGGTCCCGCCTGGCAGTTCAAAGGGTGGCCATGGCTTTTGCCTGAT
GGATCGCCAGTTGACGTGTTTGCGAAAATTAAAGCCTTCCATCTGAAATATGAGCACGTTCCTCTAGACGCCAGTGTTCA
GAAGTGGAACATAACAGTGCTGGAGCTCAGCTATTACCAACACCACTCGGACAGACTGCTTTTCTTAAGCTTCTGGGATA
CACTGGATAGCTACATGGCAAGGCATAAATCCCACTTGAGATTC

Alignment

ORF - retro_mluc_2152 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.19 %
• Parental protein coverage: 62.63 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RERVWRTRTTILQSTGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAAPVDPTLRTKQPIPAAYNRYDQE
          RERV.RTR.TILQS.GK.F.K..FAILQSV.ARE.G.AP..RPAP.AAP..PTL.T.QPIPAAY.RYDQE
Retrocopy RERVGRTRMTILQSKGKAFAKDVFAILQSVEAREKGPAPQKRPAPRAAPAAPTLPTTQPIPAAYDRYDQE

Parental  RFKGKEETEGFKIDTMGTYHGMTLKSVT-EGASARKTQTPAAQ--PVPRPVSQARPPPNQKKGSRTPIII
          RFK.K.ET.GF.IDTMGTYHG.TL.SVT.EGA..R.TQTPAAQ..PVPRPVSQARPPPNQKKGSRTPIII
Retrocopy RFKRKQETGGFHIDTMGTYHGKTLESVTLEGAATRDTQTPAAQPVPVPRPVSQARPPPNQKKGSRTPIII

Parental  IPAATTSLITMLNAKDLLQDLKFVPSDEKKKQGCQRENETLIQRRKDQMQPGGTALSVTVPYRVVDQPLK
          IPAA.TSLITMLNAKDLLQDL.FVPSDEKKKQ.C.RENETLIQRRKD..QP.GTAL..TVPYRVVDQPLK
Retrocopy IPAAATSLITMLNAKDLLQDLTFVPSDEKKKQSCRRENETLIQRRKDRVQPRGTALGLTVPYRVVDQPLK

Parental  LMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIFAKIKAFHLKYDEVRLDPNVQKWDVTVLELSYHK
          L.PQDWD.VVAVFV.GPAWQFKGWPWLLPDGSPVD.FAKIKAFHLKY..V.LD..VQKW..TVLELSY..
Retrocopy LTPQDWDQVVAVFVHGPAWQFKGWPWLLPDGSPVDVFAKIKAFHLKYEHVPLDASVQKWNITVLELSYYQ

Parental  RHLDRPVFLRFWETLDRYMVKHKSHLRF
          .H.DR..FL.FW.TLD.YM..HKSHLRF
Retrocopy HHSDRLLFLSFWDTLDSYMARHKSHLRF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2152 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000008675	2 retrocopies	retro_chof_2535, retro_chof_747,
Myotis lucifugus	ENSMLUG00000012093	2 retrocopies	retro_mluc_1439, retro_mluc_2152 ,
Monodelphis domestica	ENSMODG00000012222	1 retrocopy	retro_mdom_263,
Nomascus leucogenys	ENSNLEG00000018050	1 retrocopy	retro_nleu_2818,
Oryctolagus cuniculus	ENSOCUG00000016332	1 retrocopy	retro_ocun_302,
Otolemur garnettii	ENSOGAG00000000351	1 retrocopy	retro_ogar_767,