RetrogeneDB ID: retro_mluc_2087

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430022:1670761..1671204(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COMMD10
• Ensembl ID: ENSMLUG00000010780
• Aliases: None
• Description: None

Sequence

>retro_mluc_2087
AGCATGAAGCAAGCAGTGGCGCTGGTAAATGCAACAGGTATAGGATGGTTTCCACGATTGCTCACCTGATTCTTCAAACT
TCACCTGAAGGCTGAGAGCAGTTTCAGTAAAGAAGAGTAAGGAGAACGTGAAGCTGCATTTTTTTCTAGACAAGATCCTT
ACCTAGTTCTTGATACAATATCATTCCTTTTAGAACAGGCAGCATATCGCCATTGGAAGCCAGCAGCTTTGCAGCAGCAG
GTAGAGAACATTCATCTTAAACAAGACAACGCAGAAGCATTTGCCAGTGCTTGGTCTTCCACGGCCTGAGAAACAGTTAA
AAAATTCAGGCAGAGCAGTCTTGCTTCCCACAAGCTAGCGACTGCAGGCTGGCTGCTCGATCCTCAGAGGGCTCCTCTGC
CCCAGCAGAACCAAAACCTCCTCAAGCTGGGGCACAGCCAGGG

Alignment

ORF - retro_mluc_2087 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.25 %
• Parental protein coverage: 95.54 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SMKKAVSLINAIDIGRFPRLLTRILQKLHLKAENSFSEEEEEKLQAAFSLEKQDLHLVLETISFILEQAV
          SMK.AV.L.NA..IG.FPRLLT....KLHLKAE.SFS.EE.....AAF....QD..LVL.TISF.LEQA.
Retrocopy SMKQAVALVNATGIGWFPRLLT*FF-KLHLKAESSFSKEE*GEREAAF-FSRQDPYLVLDTISFLLEQAA

Parental  YHNVKPAALQQQLENIHLAQDKAEAFVNTWSSMGQETVEKFRQRILAPHKLETVGWQLNLQMA-HSAQAK
          Y...KPAALQQQ.ENIHL.QD.AEAF...WSS...ETV.KFRQ..LA.HKL.T.GW.L..Q.A..SA.A.
Retrocopy YRHWKPAALQQQVENIHLKQDNAEAFASAWSSTA*ETVKKFRQSSLASHKLATAGWLLDPQRA<SSAPAE

Parental  LKSPQAVLQLG
          .K.PQA..Q.G
Retrocopy PKPPQAGAQPG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2087 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000008311	2 retrocopies	retro_chof_1462, retro_chof_1585,
Cavia porcellus	ENSCPOG00000020474	1 retrocopy	retro_cpor_337,
Loxodonta africana	ENSLAFG00000011885	1 retrocopy	retro_lafr_142,
Microcebus murinus	ENSMICG00000006173	2 retrocopies	retro_mmur_1132, retro_mmur_607,
Myotis lucifugus	ENSMLUG00000010780	1 retrocopy	retro_mluc_2087 ,
Sarcophilus harrisii	ENSSHAG00000001698	1 retrocopy	retro_shar_261,
Tupaia belangeri	ENSTBEG00000004061	1 retrocopy	retro_tbel_3381,