RetrogeneDB ID: | retro_mgal_10 | ||
Retrocopy location | Organism: | Turkey (Meleagris gallopavo) | |
| Coordinates: | 1:27614246..27614636(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | AMPD1 | ||
| Ensembl ID: | ENSMGAG00000016770 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_mgal_10
GCAGGACAAGAGGAGTACAGTGCCATGCGAGACCAGTACATGAGAACGGGGGAAGGATTCCTGTGCGTCTTTGCCATTAA
CAACACCAAGTCCTTTGAGGACATCCACCAGTACAGGGAGCAGATCAAGAGGGTGAAAGACTCAGATGATGTTCCCATGG
TGCTGGTGGGAAATAAATGTGACCTGCCAGCACGGACAGTGGAGACCCAGCAAGCGCAGGACCTGGCCCGGAGTTATGGG
ATCCCCTACATAGAAACGTCAGCCAAAACCAGACAGGGCGTTGAAGATGCCTTCTATACCTTAGTGCGGGAGATCCGTCA
GCATAAACTGCGCAAGCTGAACCCACCAGATGAGAGTGGCCCTGGCTGCATGAACTGTAAATGCGTGATA
ORF - retro_mgal_10 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 80.0 % |
| Parental protein coverage: | 84.42 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTK |
| AGQEEYSAMRDQYMRTGEGFLCVFAINN.KSF.DI..YREQIKRVKDSDDVPMVLVGNKCDLP.RTV.T. | |
| Retrocopy | AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLPARTVETQ |
| Parental | QAQELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSNEDGNQGCMGLSCIV |
| QAQ.LA.SYGIP.IETSAKTRQGVEDAFYTLVREIRQ....KLN.......GCM...C.. | |
| Retrocopy | QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMNCKCVI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Meleagris gallopavo was not studied using RNA-Seq expression data.
Meleagris gallopavo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mgal_10 retrocopy.
Meleagris gallopavo was not studied using FANTOM5 data.
retro_mgal_10 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mgal_10 has 0 orthologous retrocopies within neognath group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Meleagris gallopavo | ENSMGAG00000016770 | 1 retrocopy |
retro_mgal_10 ,
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