RetrogeneDB ID: retro_meug_996

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold25350:18636..19244(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HAUS2
• Ensembl ID: ENSMEUG00000003587
• Aliases: None
• Description: HAUS augmin-like complex, subunit 2 [Source:HGNC Symbol;Acc:25530]

Sequence

>retro_meug_996
GAGATACTAGATTCATGTAATAATCCTACTCATATTTTTTGTAAACTTCTCCAGAATCATGCAGATCAAAGGTCTGCAAA
ACCAAAATCAGAGAAGGCCCTGGAAACTGACTTTTTAACACAAGAAAAGGATGCCACAGATGTCATTCATCCTTTCTTTC
TAGCTCAAAAGTGTGAGACTGTGTAAAGCATGAATCGACACTTGGAGACTGTACTGAAGGAGAAGAGGGCTCCTCTGACA
TTGACTGATGAATCTCCTGTGCCAGAACTTGCCTATAGAAGTCATTTACCACAGGTATGTGGTACAATTGTTAGAACTGG
AACTAACTTTCATTGAGAAACTAGAAGCCCATACTGAAGACATAAGAAATATTCCTTGTTTAGATTGTAGTGTGAAAAAT
TTGGATACGACTTTGACAAAAATTGTTGTCTTGTGGGAAAGACAGGAACTGAAAGAAAATATATTGAAGCAGAGGGAGCA
ACAAAAGGAAATTTCTCCTTCTATCACCAAAATATTTTCTGGAGATCTTTTCAAAAGTAGCATAAGACTATAACCCCCTT
CCACCTTTCCAGTCCAGAACTCACAGCCATCTAATTCTTGATATGAAG

Alignment

ORF - retro_meug_996 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.79 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  ETLDSCKDPAP-FFVNFSRIKQIKDLQAEIR-QKTLEIDLLTLEKDTADVVHPFFLAQKCETLQSMNQHL
          E.LDSC..P...FFVNFSRI.QIK.LQ......K.LE.D.LT.EKD..DV.HPFFLAQKCET..SMN.HL
Retrocopy EILDSCNNPTH>FFVNFSRIMQIKGLQNQNQ<EKALETDFLTQEKDATDVIHPFFLAQKCETV*SMNRHL

Parental  ETVLKEKRA-LRQRLMKPLCQENLPIEAIYHRYVVQLLELAVTFIEKLEAHIEAIRNIPCLNSSVKNMDR
          ETVLKEKRA.L...LM..LCQ.NLPIE.IYHRYVVQLLEL..TFIEKLEAH.E.IRNIPCL..SVKN.D.
Retrocopy ETVLKEKRA>L*H*LMNLLCQ-NLPIEVIYHRYVVQLLELELTFIEKLEAHTEDIRNIPCLDCSVKNLDT

Parental  ALTKMSVLEGETEELIENILKWKEHQKEISSSITKIFSGSLQKKPATIIPHL-PFQSRTQGQLILDIK
          .LTK..VL..E..EL.ENILK..E.QKEIS.SITKIFSG.L.K......P...PFQSRT...LILD.K
Retrocopy TLTKIVVL-WERQELKENILKQREQQKEISPSITKIFSGDLFKSSIRL*PPS>PFQSRTHSHLILDMK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_996 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_996 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000003587	4 retrocopies	retro_meug_1171, retro_meug_1231, retro_meug_702, retro_meug_996 ,
Microcebus murinus	ENSMICG00000000819	1 retrocopy	retro_mmur_648,
Monodelphis domestica	ENSMODG00000017882	1 retrocopy	retro_mdom_1473,
Oryctolagus cuniculus	ENSOCUG00000011004	1 retrocopy	retro_ocun_1322,
Sorex araneus	ENSSARG00000001275	2 retrocopies	retro_sara_123, retro_sara_413,
Ictidomys tridecemlineatus	ENSSTOG00000006207	1 retrocopy	retro_itri_618,
Vicugna pacos	ENSVPAG00000006260	1 retrocopy	retro_vpac_599,