RetrogeneDB ID: retro_meug_970

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold246963:1..556(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACTG2
• Ensembl ID: ENSMEUG00000005463
• Aliases: None
• Description: actin, gamma 2, smooth muscle, enteric [Source:HGNC Symbol;Acc:145]

Sequence

>retro_meug_970
AAGATCCTCACAGAAAGAGGCTACTCCTTTGTGACCACAGCTGAAAGTGAAATTGTAAGGGATATCAAGGAGAAACTGTG
CTATGTGGCCCTAGACTTTGAGAATGAGATGGCCACAGCTGCCACCTCTTCTTCCCTGGAGAAGAGCTATGAGTTACCTG
ACAGTCAGGTCATCACCATTGGCAATGAACACTTCCGCTGCCCAGAAACCCTCTTTCAGCCCTCCTTCATTGGTATGGAG
TCTGTAGGCATTCATGAAACAACTTACAATTCCATCATGAAATGTGACATTGACATCCAGAAAGACTTATATGCCAACAA
CGTCCTCTCTGGTGGGACCACCATGTGCCCTGGCATTGCAGATAGGATGCAGAAGGAGATTACAGCCCTGGCCCCCAGCA
CCATGAAGATCAAGATCATTGCTCCCCCTGAGCACAAGTATTTGGTTTGGATTGGGGGCTCCATCCTGGCCTCTCTCTCC
ACCTTCCAGCAGATGTGGATCAGCAAACCAGAGTATGACGAGGCTGGGACTTCCATTGTCCACAGGAAGTGTTTC

Alignment

ORF - retro_meug_970 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.14 %
• Parental protein coverage: 82.22 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAATSSSLEKSYELPDGQVITIGNERFRCPET
          KILTERGYSFVTTAE.EIVRDIKEKLCYVALDFENEMATAATSSSLEKSYELPD.QVITIGNE.FRCPET
Retrocopy KILTERGYSFVTTAESEIVRDIKEKLCYVALDFENEMATAATSSSLEKSYELPDSQVITIGNEHFRCPET

Parental  LFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKII
          LFQPSFIGMES.GIHETTYNSIMKCDIDI.KDLYANNVLSGGTTM.PGIADRMQKEITALAPSTMKIKII
Retrocopy LFQPSFIGMESVGIHETTYNSIMKCDIDIQKDLYANNVLSGGTTMCPGIADRMQKEITALAPSTMKIKII

Parental  APPERKYSVWIGGSILASLSTFQQMWISKPEYDEAGPSIVHRKCF
          APPE.KY.VWIGGSILASLSTFQQMWISKPEYDEAG.SIVHRKCF
Retrocopy APPEHKYLVWIGGSILASLSTFQQMWISKPEYDEAGTSIVHRKCF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_970 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_970 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 63 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000008526	1 retrocopy	retro_etel_41,
Macropus eugenii	ENSMEUG00000005463	1 retrocopy	retro_meug_970 ,
Macropus eugenii	ENSMEUG00000010843	1 retrocopy	retro_meug_1374,
Macropus eugenii	ENSMEUG00000016247	57 retrocopies	retro_meug_1006, retro_meug_1010, retro_meug_1018, retro_meug_1042, retro_meug_105, retro_meug_1085, retro_meug_1147, retro_meug_1186, retro_meug_1200, retro_meug_1230, retro_meug_1237, retro_meug_1380, retro_meug_1414, retro_meug_1437, retro_meug_1529, retro_meug_1534, retro_meug_1557, retro_meug_1588, retro_meug_1613, retro_meug_1624, retro_meug_1654, retro_meug_1656, retro_meug_1664, retro_meug_1669, retro_meug_1708, retro_meug_1716, retro_meug_1723, retro_meug_1753, retro_meug_1763, retro_meug_18, retro_meug_1935, retro_meug_1969, retro_meug_197, retro_meug_1982, retro_meug_1991, retro_meug_2100, retro_meug_2176, retro_meug_218, retro_meug_270, retro_meug_333, retro_meug_370, retro_meug_379, retro_meug_468, retro_meug_506, retro_meug_556, retro_meug_574, retro_meug_581, retro_meug_61, retro_meug_735, retro_meug_790, retro_meug_833, retro_meug_90, retro_meug_900, retro_meug_915, retro_meug_924, retro_meug_925, retro_meug_959,
Vicugna pacos	ENSVPAG00000010621	3 retrocopies	retro_vpac_12, retro_vpac_355, retro_vpac_651,