RetrogeneDB ID: retro_meug_953

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold243279:308..1370(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000016000
• Aliases: None
• Description: None

Sequence

>retro_meug_953
ACAGGACTTGACCTGACCAAAGACAGTAGGGCTCTTCAGAGAGTACGAGAGGCCTCTGAGAAGGTCAAGAGGGAGTTTTC
TTCTTCTGTGCAGACTGACATCAACTTACCATATTTGACTATGGATGCTTCTGGACCCAAGCACTTGAACATGAAGCTAA
TTCAAGTTCAGTTTGAGAGCATTGTCACTGATCGCATCAGGAGGATTATTGATGTATGCCAAAAGGCCATGCAAGATGCT
GAAGTCAGCAAGAGTGATATTGGAGAAGTCAAGCTAATTGGTGACATTAGCAGAATGCCCAGGGTTCAGCAGACAGTACA
AGAACTCTTTGGCCAGGCCCCTAGTAGAGCTGTCAATCCTGATGGGGCTGTGGTTATGGGGGCTGCCATTCAAGGAGATG
TGTTAGCTTGTGATGTCACAGATGTACTACTTCTGGATGTCATTCCCTTTTCTCTGGACATTGAGACACTAGGAGGTGTC
TTCACCAAACTAATCAATAGGAATACAACTATTCCAAATAAGAAGAGCCAGGTGTTTTCTATAGCTGCTGATGGTCAGAC
ACAAGTGGAAATTAAAGTGTTCCAAGGAGAGAGAGAAATGTCTGCAGACAACAAGCTTCTTGGACAGTTTACTTTGATTG
ACATTCCACCAACCCCACGTGGAGTCCCACAAATTGCAGTCACATTTCCCATTGATCCTAATGGGATTGTACATGTTTCT
ACTAAGGATTAAGGCACAGGACATGAACAACAAATTGTGATCCAGTCTTCTGGTGGATTAAGCAAAGATGACATTAAGGA
TAGGGCTAAGAATGCTGAGGAAAATAGAAGGAATAAAGAAAGTGCAGAAGCTGTCAATATGGCAGAAGGAATTATTCATG
ATACTGGAATAAAAAAGGAAGAAATCAAAGATCAACTTCCAGCAGATGAGTGCAATAAACTAAAAGAAGAAATTTCTACA
ATGAGAGAGTGTTTGGCTCACAAAGATAGTGAAACAGGAGAAAGCTTCAGGCAGGCAGCATGTACTCTGCAGCAAGCGTC
ATTAAAGCTCTTTGAAATGGCA

Alignment

ORF - retro_meug_953 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.4 %
• Parental protein coverage: 52.8 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TGLDLTKDNMALQRVREASEKAKCELSSSVQTDINLPYLTMDASGPKHLNMKLTRAQFEGIVTDLIKRTI
          TGLDLTKD..ALQRVREASEK.K.E.SSSVQTDINLPYLTMDASGPKHLNMKL...QFE.IVTD.I.R.I
Retrocopy TGLDLTKDSRALQRVREASEKVKREFSSSVQTDINLPYLTMDASGPKHLNMKLIQVQFESIVTDRIRRII

Parental  APCQKAMQDAEVNKSDIGEVILVGGMSRMPKVQQTVQELFGRAPSKAVNPDEAVAMGAAIQGGVLAGDVT
          ..CQKAMQDAEV.KSDIGEV.L.G..SRMP.VQQTVQELFG.APS.AVNPD.AV.MGAAIQG.VLA.DVT
Retrocopy DVCQKAMQDAEVSKSDIGEVKLIGDISRMPRVQQTVQELFGQAPSRAVNPDGAVVMGAAIQGDVLACDVT

Parental  DVLLLDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAADNKLLGQF
          DVLLLDV.P.SL.IETLGGVFTKLINRNTTIP.KKSQVFS.AADGQTQVEIKV.QGEREM.ADNKLLGQF
Retrocopy DVLLLDVIPFSLDIETLGGVFTKLINRNTTIPNKKSQVFSIAADGQTQVEIKVFQGEREMSADNKLLGQF

Parental  TLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEEDR
          TLI.IPP.PRGVPQI.VTF.ID.NGIVHVS.KD.GTG.EQQIVIQSSGGLSKDDI....KNAE....E.R
Retrocopy TLIDIPPTPRGVPQIAVTFPIDPNGIVHVSTKD*GTGHEQQIVIQSSGGLSKDDIKDRAKNAE----ENR

Parental  RKKERVEAVNMAEGIIHDTETKMEEFKDQLPADECNKLKEEISRMRELLARKDSETGENIRQAASTLQQA
          R.KE..EAVNMAEGIIHDT..K.EE.KDQLPADECNKLKEEIS.MRE.LA.KDSETGE..RQAA.TLQQA
Retrocopy RNKESAEAVNMAEGIIHDTGIKKEEIKDQLPADECNKLKEEISTMRECLAHKDSETGESFRQAACTLQQA

Parental  SLKLFEMA
          SLKLFEMA
Retrocopy SLKLFEMA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_953 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_953 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000014493	1 retrocopy	retro_dord_304,
Macropus eugenii	ENSMEUG00000016000	1 retrocopy	retro_meug_953 ,
Ornithorhynchus anatinus	ENSOANG00000002817	1 retrocopy	retro_oana_82,
Tupaia belangeri	ENSTBEG00000015361	1 retrocopy	retro_tbel_2365,
Tarsius syrichta	ENSTSYG00000011769	1 retrocopy	retro_tsyr_2147,
Vicugna pacos	ENSVPAG00000006332	1 retrocopy	retro_vpac_524,