RetrogeneDB ID: | retro_meug_802 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold19174:6466..7401(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMEUG00000009278 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ALDH1A3 | ||
| Ensembl ID: | ENSMEUG00000002553 | ||
| Aliases: | None | ||
| Description: | aldehyde dehydrogenase 1 family, member A3 [Source:HGNC Symbol;Acc:409] |
Retrocopy-Parental alignment summary:
>retro_meug_802
ATACCTGCCCCAGTCACCAACTGCAAAATCCAGTACACTAAGATATTTATAAACAATGAATGGCATGATTCAGTGAGTGG
CAAGAAATTCCCAGTCATTAACCCTGCTACTGAGGAAAAAATTTGTGATGTAGAAGAAGGAGATAAGGCAGATGTGGACA
AGGCAGTGAAGGCAGCAAGGAAGGCTTTTCAGCTCGGATCCCCATGGAGGACAATGGATGCTTCAGAGAGAGGTCGGCTC
CTGAACAAACTGGCTGATTTAATTGAAAGAGATCGCCTGCTCTTGGCAACAATAGAATCAATGAATGCTGGAAAAGTCTT
CCCCACAGCCTACATGATGGATTTAGTCTCCTCTGTGAATGTTTTACACTATTATGCAAGCTGGGCTGATAAGGTGCAGG
GTCGTACAATCCCAATTGATGGGAAGTTTTTCTCATATACAAGACATGAACCTGTTGGTATTTGTGGCCAAATCATTCCT
TGGAATTTCCCTTTGATTATGCTTATGTGGAAAATTGCACCTGCCCTTTGCTGTGGAAACACCGTAATTGTTAAGCCAGC
AGAACAGACTCCACTAACTGCTCTTTATGTAGCATCATTAATTAAAGAGGCAGGATTTCCACCAGGAGTAGTGAATATTG
TGCCTGGTTATGGACCCACAGCTGGAGCAGCCATTTCTTCTCACATGGATGTAGATAAAGTAGCCTTCACAGGGTCCACA
GAGGTTGGCCTGCTAATTAAGGAGGCTGCTGGGAAGAGCAACCTAAAGAGGGTTTCACTGGAGCTGGGAGGAAAGAGCCC
TTGCATTGTATTTGCTGATGCTGACTTGGATAATGCTGTGGAATCCGCACACCTTGGGTTATTTTTCTACCACGGCCAGT
GCTGCACTGCTGCATCGAGGCTTTTTGTGGAGAGTCCATTTACAATGAGTTTGTT
ORF - retro_meug_802 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 71.25 % |
| Parental protein coverage: | 63.86 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | LPHPIRNLEVKHTKIFINNEWHESKSGKKFPTYNPSTVEKICEVEEGDK-DIDKAVEAAKAAFQRGSLWR |
| .P.P..N.....TKIFINNEWH.S.SGKKFP..NP.T.EKIC.VEEGDK.D.DKAV.AA..AFQ.GS.WR | |
| Retrocopy | IPAPVTNCKIQYTKIFINNEWHDSVSGKKFPVINPATEEKICDVEEGDKADVDKAVKAARKAFQLGSPWR |
| Parental | QMDALSRGRLLHKLADLMERDRIILATLETMDTGKPFLHAFFIDLEGCIKTLRYYAGWADKIHGRTIPAD |
| .MDA..RGRLL.KLADL.ERDR..LAT.E.M..GK.F..A...DL......L.YYA.WADK..GRTIP.D | |
| Retrocopy | TMDASERGRLLNKLADLIERDRLLLATIESMNAGKVFPTAYMMDLVSSVNVLHYYASWADKVQGRTIPID |
| Parental | ENVVCFTRHEPIGVCGAIIPWNFPLMLLIWKMAPALCCGNTIVIKPAEQTPLTSLYLGSLIKEVGFPPGV |
| ......TRHEP.G.CG.IIPWNFPL..L.WK.APALCCGNT...KPAEQTPLT.LY..SLIKE.GFPPGV | |
| Retrocopy | GKFFSYTRHEPVGICGQIIPWNFPLIMLMWKIAPALCCGNTVIVKPAEQTPLTALYVASLIKEAGFPPGV |
| Parental | VNIVPGYGPTAGAAISSHPKIDKIAFTGSTEVGKLIKEAASKSNLKRVTLELGGKNPCIVCADADLDLAV |
| VNIVPGYGPTAGAAISSH...DK.AFTGSTEVG.LIKEAA.KSNLKRV.LELGGK.PCIV.ADADLD.AV | |
| Retrocopy | VNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGLLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAV |
| Parental | ECAHRGVFFNQGQCCTAASRVFVE-EQIYPEFV |
| E.AH.G.FF..GQCCTAASR.FVE.E.IY.EFV | |
| Retrocopy | ESAHLGLFFYHGQCCTAASRLFVE<ESIYNEFV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_802 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_802 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000002553 | 3 retrocopies |
retro_meug_1574, retro_meug_1848, retro_meug_802 ,
|
| Macropus eugenii | ENSMEUG00000008847 | 1 retrocopy |