RetrogeneDB ID: | retro_meug_80 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | GeneScaffold_1780:16626..17256(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ARHGAP40 | ||
| Ensembl ID: | ENSMEUG00000005260 | ||
| Aliases: | None | ||
| Description: | Rho GTPase activating protein 40 [Source:HGNC Symbol;Acc:16226] |
Retrocopy-Parental alignment summary:
>retro_meug_80
AAAGTAAAAGGCCGAGAAAATGGACTTTTTGGTGTTCCACTTACTGTCCTGTTGGAAAATGATCAAAAGAAGTTCCCTGG
AATTAAAGTTCCTCTCATCTTCCAAAAACTTTTGCAGAAACTTGAAGAAACAGGTTTGGAAACAGAAGGAATCCTTCGAG
TCCCAGGATCTGCATCCAGAGTCAAGAACCTCCACCAAGAACTTGAAAGCAAATTTTATGAAGATACGTTTGATTGGGAC
CAAGTCTGAAACAACGATGCAGCAGGACTGCTAAAGATGTTTATCAGAGACCTTCCCAGCCCTCTCTTTACTGTGGAATA
TCTGCCTGCCTTCATTGCCTTAGTGGAAAGAATCTCCAAGATCAAATTGCAGTTACAAGCTTTGCACCTTTTGATTATGC
TTCTGCCTGATGCCAATAGAGATACTGCCAAGGCCTTCCTGATATTCCTCAAGAAAGTGGTTGCTAATGAAGGGAAAAAC
AAAAAGAGTTTGTGGAATGTTTCCATGATCGTTGCACCAAATCTCTTCATCTATAAAGGCAAACGCTCCAATCAAGAAGA
GATGCAGGCCGCTGCTACCACTGCACACATTGTCTGGCTCTTGATTAGGTACCAGGATATTTTGTGGACG
ORF - retro_meug_80 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 57.75 % |
| Parental protein coverage: | 87.97 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | KWKATENRLFGVPLSTLLETDQKVVPHTQVPLILQALLSCLEKRGLDTEGILRVSGSQTRIKSLEQKLER |
| K.K..EN.LFGVPL..LLE.DQK..P...VPLI.Q.LL..LE..GL.TEGILRV.GS..R.K.L.Q.LE. | |
| Retrocopy | KVKGRENGLFGVPLTVLLENDQKKFPGIKVPLIFQKLLQKLEETGLETEGILRVPGSASRVKNLHQELES |
| Parental | EFYAGLFNWDEVHQNDASGLLKRFIRELPTPLLTAEYLPAF-TVVQNIPDLKQRLQALNLLILILPEANR |
| .FY...F.WD.V..NDA.GLLK.FIR.LP.PL.T.EYLPAF...V..I...K..LQAL.LLI..LP.ANR | |
| Retrocopy | KFYEDTFDWDQV*NNDAAGLLKMFIRDLPSPLFTVEYLPAFIALVERISKIKLQLQALHLLIMLLPDANR |
| Parental | NTLKALLEFLRKVVDREKKNKMTLWNVSMVMAPNLFMHKGQPPRIPEGKGKQLAEGAADVVRAMIHYQDL |
| .T.KA.L.FL.KVV..E.KNK..LWNVSM..APNLF..KG......E....Q.A...A..V...I.YQD. | |
| Retrocopy | DTAKAFLIFLKKVVANEGKNKKSLWNVSMIVAPNLFIYKGKRSNQEE---MQAAATTAHIVWLLIRYQDI |
| Parental | LWT |
| LWT | |
| Retrocopy | LWT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_80 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_80 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000005260 | 1 retrocopy |
retro_meug_80 ,
|