RetrogeneDB ID: retro_meug_764

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold181206:2732..3137(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000004742
• Aliases: None
• Description: None

Sequence

>retro_meug_764
TTGGAAACCATGAAGTCTGTCTAGATCCCCAAGGAGCTGCCCCTCTCTCAGCTGTGCAAATTAGCAGACCAGCAGCTTCG
TCCTGTTATCCAGTACTCCACAGTAAGGCAGTTCCCCCTCACCAATCTGGTGAAAGCCACCACTGGGCAGTTCAAGTAGA
GAATCAGCATTGAAGCCTTGATCCAGCAGATGGACAAGATCAAGGACTTCCCCCAACTCCAGAAACCCTACCCTGACCCC
ACACTCCTCCTCAGTGGTGCTAACTTCACATTCATCCAGCCTAGTCATTTCTCCAAGATCAAGCATCTGTTCCCTCAAGC
TCAGATACTGTCCATCCCAGGGGCAGGCCATTGGTTTCATGTTGACCAACCCCAAGACTTCATGACCAGTGTTAAATGCT
TCCTG

Alignment

ORF - retro_meug_764 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.04 %
• Parental protein coverage: 50.94 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LEAMKAVQIPEELSLSQARKIADQQLSPVIQDSTIRQFLLTNLVEASTGQFEWRVNIEALIQQMDKILDF
          LE.MK.V.IP.EL.LSQ..K.ADQQL.PVIQ.ST.RQF.LTNLV.A.TGQF..R..IEALIQQMDKI.DF
Retrocopy LETMKSV*IPKELPLSQLCKLADQQLRPVIQYSTVRQFPLTNLVKATTGQFK*RISIEALIQQMDKIKDF

Parental  PQLQKSYPGPTLFLSGAKSTFIQPSHYSEIKRLFPQAQILSIPGAGHWIHADQPQDFMTNVKRFL
          PQLQK.YP.PTL.LSGA..TFIQPSH.S.IK.LFPQAQILSIPGAGHW.H.DQPQDFMT.VK.FL
Retrocopy PQLQKPYPDPTLLLSGANFTFIQPSHFSKIKHLFPQAQILSIPGAGHWFHVDQPQDFMTSVKCFL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_764 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_764 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000004742	3 retrocopies	retro_meug_1154, retro_meug_1693, retro_meug_764 ,