RetrogeneDB ID: retro_meug_491

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold123559:7276..7675(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WDYHV1
• Ensembl ID: ENSMEUG00000008130
• Aliases: None
• Description: WDYHV motif containing 1 [Source:HGNC Symbol;Acc:25490]

Sequence

>retro_meug_491
ATGGAGGAAGAGGGATTCACTTCTGAGGCTACCAGCCAGTCAGCCCATCTTGGAATGCCTGCACCTAGAGCAGTTGCCCC
TGTGAAGAAAATATCGGGAAGATTTGTGAATACATAAAAAGCCATGATGATCGATATCCTTTACAAGAATGTTATGGTGT
TTTCATATCTAATGAGAGAAGGATGACCCCAGTCTGGAAGCATCAGGCCAAAACTGGAGATGGACCTCTCGTTTGGGATT
ACCATGTTATTTTGTTTCATGTTTCAAGTGGAGGACAGAGTTTCATTTATGATCTTGATGTTGTGTTGTCCATGTCCCTT
TGACACTTATGTAGAAATTATATTTAAGTCTGATGATGATATTTGTCTACAATTTAGAAAATTTTGAGTGATTGGAGCA

Alignment

ORF - retro_meug_491 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.74 %
• Parental protein coverage: 66.18 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MEGEGSVSR-GYQPASPPRDACTYSSCYCEENIWKLCEYIKNHD-QYPLEECYAVFISNERRMIPIWKQQ
          ME.EG..S..GYQP.SP...ACT.SSC.CEENI.K.CEYIK.HD..YPL.ECY.VFISNERRM.P.WK.Q
Retrocopy MEEEGFTSE<GYQPVSPSWNACT*SSCPCEENIGKICEYIKSHDDRYPLQECYGVFISNERRMTPVWKHQ

Parental  ARPGDGPIIWDYHVVLLHVSSGGQSFIYDLDTVL-PFPCPFDTYVEDAFKSDDDIHPQFRRKFRVIRA
          A..GDGP..WDYHV.L.HVSSGGQSFIYDLD.VL.P.P..FDTYVE..FKSDDDI..QF.RKF.VI.A
Retrocopy AKTGDGPLVWDYHVILFHVSSGGQSFIYDLDVVL>PCP--FDTYVEIIFKSDDDICLQF-RKF*VIGA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_491 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_491 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000000865	1 retrocopy	retro_cjac_4210,
Macropus eugenii	ENSMEUG00000008130	3 retrocopies	retro_meug_1679, retro_meug_491 , retro_meug_565,
Oryctolagus cuniculus	ENSOCUG00000014201	1 retrocopy	retro_ocun_266,