RetrogeneDB ID: | retro_meug_46 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold488648:3..438(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMEUG00000010041 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DNAJC5B | ||
| Ensembl ID: | ENSMEUG00000002874 | ||
| Aliases: | None | ||
| Description: | DnaJ (Hsp40) homolog, subfamily C, member 5 beta [Source:HGNC Symbol;Acc:24138] |
Retrocopy-Parental alignment summary:
>retro_meug_46
GACAAGTTCAAGGAGATCAACCAGGCGCACGCAATCCTGACCGACGCCACCAAAAGGACCATCTACGACAAGTACGGCTC
CTTGGGCCTCTACGTGGCCGAGCAGTTCGGGGAGGAGAACGTGCACACCTACTTCGTGCTCTCCAGCTGGTGGGCCAAGG
CCCTGTTTCTCGGCTGCGGGGCCCTGACCGCGTGCTACTGTTGCTGCTGCCTGTGCTGCTGCTTTAACTTCTGCTGCGGA
AAGTGCAAACCTAAGGCTCCGGAAGGCGCCGGCCGAGAGCCCCACGTCTCCTCCGAGGACCTGGAGGCGCAGCTGCGGTC
TGAGGACAGGGAGGCCCTGGGCACACCTATTGTGATCCAACCAGCGCCGGCCGCGGAGACCGTGCGGCTCACCGCCGACT
CCCACCCCAGCCACCTCACCGAGGGATTTCACTAA
ORF - retro_meug_46 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 64.18 % |
| Parental protein coverage: | 67.34 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | EKFKEINNAHTILTDLTKRSIYDKYGSLGLYVAEQFGEENVNTYFMLSSWWAKTLFVIFGLLTGCYFCCC |
| .KFKEIN.AH.ILTD.TKR.IYDKYGSLGLYVAEQFGEENV.TYF.LSSWWAK.LF...G.LT.CY.CCC | |
| Retrocopy | DKFKEINQAHAILTDATKRTIYDKYGSLGLYVAEQFGEENVHTYFVLSSWWAKALFLGCGALTACYCCCC |
| Parental | LCCCCNCCCGRCRPKSPKGGEGEVYMSPEDLEEQIRSDMEKEADFPITLQPTCANEKTQLIRES |
| LCCC.N.CCG.C.PK.P.G...E...S.EDLE.Q.RS........PI..QP..A.E...L...S | |
| Retrocopy | LCCCFNFCCGKCKPKAPEGAGREPHVSSEDLEAQLRSEDREALGTPIVIQPAPAAETVRLTADS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_46 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_46 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000002874 | 1 retrocopy |
retro_meug_46 ,
|