RetrogeneDB ID: | retro_meug_444 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold11516:15134..15933(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MAPKAP1 | ||
| Ensembl ID: | ENSMEUG00000005228 | ||
| Aliases: | None | ||
| Description: | mitogen-activated protein kinase associated protein 1 [Source:HGNC Symbol;Acc:18752] |
Retrocopy-Parental alignment summary:
>retro_meug_444
ATGGCCTTCTTAGATAACCCAACAGTCATCCTGGCTCATATCCAGCAATCTCATGTGACCGGGGATGACATGGGGATGTG
TGAGATCATCCTAACTGATCGTGATGTAGATCTGGAAAAGTTTCATCCACCTTTGGTGCCTGGAGATGGTGGCTCAGAAA
TTCCAGGAAGCAGTGTTGAAACTCAGGGCTGGGTCTATGCTCAACATGTTGAGAATACCTCAGTTGGGACTTTTGCATCA
GAAGACACTCAAACATAGCTCGAGATTAGAGAGACTTCAAAAAAGAGAGACAAAACCAGATAAAATGCAAGAATGTCCCA
TAAAAAGAAGAAATGCTTCTCGTTCAACAAAGGAGCTCAGTTCATTTTTTGAAAAAAAGAACTTCAAAGTCAAGTCTTCA
AGTGTAGGGAAGCCATCGCTCCTCTCTGTGCACCTAGAGCAGTGCCCTCTCCGACTAAATGATTCTTTTAATGAGTATTC
CAAATTTGATGATAAGGGCCACAGTAGAGACCACTGCAACCAAAAAAATTGACGGCTACCTTGCACTGCACACAAGCCAA
GACAGACTGTTACTAATGACAGTTGTGACCATAGCACATGCCAAGGTGTATGACCTAATCAGACTAATCTGCTGGCAGTA
TACAAGTGAAAGACGAGAACCCAAGCTCAATGACAACGTTAGTGCTTATTGTCTCCATAGGCTGAGGACAACGGTGAGGT
TGACATAGACTTCCCTCTCCTGGATTCCAATGAACCCATTCGCAAATTTGGCTTCAGCACTTTGGCCTTGGTTGAGAAG
ORF - retro_meug_444 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 80.95 % |
| Parental protein coverage: | 51.45 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 6 |
Retrocopy - Parental Gene Alignment:
| Parental | MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKFHPPLVPGDSGLEMPGSSVETQGYVYAQSV |
| MAFLDNPT.ILAHI.QSHVT.DD.GMCE..L.D.DVDLEKFHPPLVPGD.G.E.PGSSVETQG.VYAQ.V | |
| Retrocopy | MAFLDNPTVILAHIQQSHVTGDDMGMCEIILTDRDVDLEKFHPPLVPGDGGSEIPGSSVETQGWVYAQHV |
| Parental | DITS-SWDFGIRRRSNTAQ-RLERL-RKERQNQIKCKNVPWKE-RNASHSAEELSSLFEKKNFKVKSSSV |
| ..TS.SWDF.IRR.SN.A..RLERL..KERQNQIKCKNVP.KE.RNAS.S..ELSS.FEKKNFKVKSSSV | |
| Retrocopy | ENTS<SWDFCIRRHSNIAR<RLERL>KKERQNQIKCKNVP*KE<RNASRSTKELSSFFEKKNFKVKSSSV |
| Parental | GKPSLLSVRLEQCPLQLNNPFNEYSKFDGKG-PVGTTATKKIDVYLPLHTSQDRLLPMTVVTIAHAKVHD |
| GKPSLLSV.LEQCPL.LN..FNEYSKFD.KG..V.TTATKKID.YL.LHTSQDRLL.MTVVTIAHAKV.D | |
| Retrocopy | GKPSLLSVHLEQCPLRLNDSFNEYSKFDDKG>TVETTATKKIDGYLALHTSQDRLLLMTVVTIAHAKVYD |
| Parental | LIGLICWQYTSEGREPKLNDNVSAYCLHI-AEDNDEVDTDFLPLDSNEPIHKFGFSSLTLVEK |
| LI.LICWQYTSE.REPKLNDNVSAYCLH..AEDN.EVD.DF..LDSNEPI.KFGFS.L.LVEK | |
| Retrocopy | LIRLICWQYTSERREPKLNDNVSAYCLHR<AEDNGEVDIDFPLLDSNEPIRKFGFSTLALVEK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_444 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_444 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000009733 | 1 retrocopy | |
| Macropus eugenii | ENSMEUG00000005228 | 1 retrocopy |
retro_meug_444 ,
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