RetrogeneDB ID: retro_meug_406

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold110178:3989..4541(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ALKBH6
• Ensembl ID: ENSMEUG00000007262
• Aliases: None
• Description: alkB, alkylation repair homolog 6 (E. coli) [Source:HGNC Symbol;Acc:28243]

Sequence

>retro_meug_406
GTGTATGAGGCTCCAAAGCCCAAATGGACACAGCTTTCTTGGAGGAACTTACAGAACTGGGGTGGGCTCCCCCACCCAAA
GGGGATGGTCCTTGAGCAGCTGCCTCAGTGGCTCCAGCACTGGGTGGGCTCTGTCTCTAGTCTTGGCCTCTTTGGCGGTG
CCCAAGCTAATCAGGTGCTGGTAAATGAGTACCGGCCAGGAGAGAGCATCATGTCCCATGAGAATGGCCCCCAGTACTAC
CCAACGGTCAGCACTATCAGCCTTGGCTCCCATACCATCCTGGACATGTACCTGCCCCAAAGGCCTGAGCTGGAGAAGAA
TCCACAAGAGGAGCAGCCTCAGCTTCAGCCCAAGTTCTCGCTGCTGCTGGAGCCCCAAAGCCTCCTGGTCCTCTGAGGTG
AAGCCTACACTCACCTCCTCCATGGGATCTGCCCAACATTGATGGACTCTCTGACCAAGACCCCCGTGGCCAATGCTTCT
GCCTGCCCCTCAGCTGAGCCTGGAGCCCTGCTGCCCCGGGGCACACGCATCTCCCTGACTATTCGAAATGTT

Alignment

ORF - retro_meug_406 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.5 %
• Parental protein coverage: 93.33 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VYEAPKPKWTQLSGRKLQNWGGLPHPKGMVPEQLPPWLQHWVDSVSSLGLFGGAQANHVLVNEYQPGEGI
          VYEAPKPKWTQLS.R.LQNWGGLPHPKGMV.EQLP.WLQHWV.SVSSLGLFGGAQAN.VLVNEY.PGE.I
Retrocopy VYEAPKPKWTQLSWRNLQNWGGLPHPKGMVLEQLPQWLQHWVGSVSSLGLFGGAQANQVLVNEYRPGESI

Parental  MPHEDGPLYYPTVSTISLGSHTILDMYLPRRPEGE--GPTEQPQFQPKFSLLLEPRSLLVLRGEAYTHLL
          M.HE.GP.YYPTVSTISLGSHTILDMYLP.RPE.E.....EQPQ.QPKFSLLLEP.SLLVL.GEAYTHLL
Retrocopy MSHENGPQYYPTVSTISLGSHTILDMYLPQRPELEKNPQEEQPQLQPKFSLLLEPQSLLVL*GEAYTHLL

Parental  HGIRPTLMDSLTKTPVANASACPSAEPGALLPRGTRISLTIRRV
          HGI.PTLMDSLTKTPVANASACPSAEPGALLPRGTRISLTIR.V
Retrocopy HGICPTLMDSLTKTPVANASACPSAEPGALLPRGTRISLTIRNV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_406 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_406 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007262	1 retrocopy	retro_meug_406 ,