RetrogeneDB ID: retro_meug_363

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold105531:2864..3297(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NRBP2
• Ensembl ID: ENSMEUG00000012924
• Aliases: None
• Description: nuclear receptor binding protein 2 [Source:HGNC Symbol;Acc:19339]

Sequence

>retro_meug_363
ATGCATGCACTGGAGATAGCAGGGAAATGGAGAGTCATCTTACATTCCACAGGAAGTCATCAGTAGTGTTACCCAGCTCC
TCGAGGACCCACTTCAGAGGGAGTTCATTCAAAAATACCTGCAAAGTGAGCCTGCCTGTCGGCCTACAACCAGAGAAATA
CTTTTCCATCCTGTACTGTTTAAGATGTCCTCACTCAAACTGCTTGCTACACATTGCATTGTGGGACACCACCACCTCAT
ACCAGAAAATGCCCTGGAGGAGATCACCAAGAACATGAACACCAATGCTGTACTGGCAGAAATCCCTCCAGGACCTGGGA
GGGAACTTTATCAGACCCTGTATTCTCAGTCACCAGCTCTGGAATTGGAAAAGTTCCTTGAAGATGTAAGAAATGGGATC
TACCCCCTACGGGCCTTTGGGCTACTTTGGCCC

Alignment

ORF - retro_meug_363 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.34 %
• Parental protein coverage: 55.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAVLEI-QSNGDTR-VTEEAIARARHSLSDPNMREFILSCLVLDPACRPSAHNLLFHRVLFEVHSLKLLA
          M..LEI.Q.NG.......E.I......L.DP..REFI...L...PACRP.....LFH.VLF...SLKLLA
Retrocopy MHALEI>QGNGESSYIPQEVISSVTQLLEDPLQREFIQKYLQSEPACRPTTREILFHPVLFKMSSLKLLA

Parental  AHCFIQHQYLMPENVVEEKTKVIDLNMVMAEI-HRTGRPRVQWRYSEVSFLELDKFLEDVRNGIYPLMNF
          .HC...H..L.PEN..EE.TK....N.V.AEI....GR...Q..YS....LEL.KFLEDVRNGIYPL..F
Retrocopy THCIVGHHHLIPENALEEITKNMNTNAVLAEIPPGPGRELYQTLYSQSPALELEKFLEDVRNGIYPLRAF

Parental  AASRP
          ....P
Retrocopy GLLWP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_363 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_363 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000012924	1 retrocopy	retro_meug_363 ,