RetrogeneDB ID: | retro_meug_362 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold105450:6527..7222(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DDX49 | ||
| Ensembl ID: | ENSMEUG00000011888 | ||
| Aliases: | None | ||
| Description: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:HGNC Symbol;Acc:18684] |
Retrocopy-Parental alignment summary:
>retro_meug_362
GATTCCCAGGTTGAGGTCCACATCATGGAGCAGCTTGACCAGCAGTACTTACTGGTGCCTGAGAAGGTAAAGGATGCCTA
CCTGATCCACCTGATACAATACTTCCACTGAGGGCATGAAGACCTGTTCATCATCGTTTTCATCAGCACATTCAAGACCT
GCCACGTATTGAACATGATGCTGAGGAAATTCAGCTTCCCTTCTATTTCATTCCAGTCCCTGAGGAAGGAAAAAAGCTTG
TTTTGCTACTTTGGCCAAATTCAAGTTTAGCATCTTGTTTGCAACAGATGTGGCATCTGAAGGCTTGGATTTTCCCTCCA
TGCAGGTGGTCATTACCCATCATACTCCAAGCTTCTCCAAGATCTATGTCCAGTGAATAGGGCTGCTTTCCCTAGTAGGT
GTCACAGCATTGCCATTGCGTTGTGATCCAGTAAAATATACACCTATTACACTCCAGTCAGGAAGAGATCAAGAAGAAGC
TGTACAATTTGATATGGTGGAGGCCAAGGTGCTCAAAATCTTCACCCCAATCAACGTGGTCCAAAAAGAATGAGAGATTA
AACTGGAGGCCACAGACTTTGATGAGAAGAAAGAGATCAATAAGAGGAAGAAGCTAATCGTAGAAGGGGAGATCTCAACC
TGGAGGCCAAAAATAAGGCAGAGCTGGCCCAGATGAGCAGAAGAATAAACAGTTT
ORF - retro_meug_362 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.22 % |
| Parental protein coverage: | 53.15 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 6 |
Retrocopy - Parental Gene Alignment:
| Parental | EAQAEVRTVEQLDQRYLLVPEKVKDAYLVHLIQTFHDEHEDWSIIIFTNTCKTCQVLNMMLRKFNFPSVA |
| ..Q.EV...EQLDQ.YLLVPEKVKDAYL.HLIQ.FH..HED..II.F..T.KTC.VLNMMLRKF.FPS.. | |
| Retrocopy | DSQVEVHIMEQLDQQYLLVPEKVKDAYLIHLIQYFH*GHEDLFIIVFISTFKTCHVLNMMLRKFSFPSIS |
| Parental | LHSMMKQ-KARFAALAKFKSSVYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAG-RH |
| ..S..K..KA.FA.LAKFK.....IL.ATDVAS.GLD.P..QVVI.H.TP...KIY....G.....G..H | |
| Retrocopy | FQSLRKE>KACFATLAKFK---FSILFATDVASEGLDFPSMQVVITHHTPSFSKIYVQ*IGLLSLVG<CH |
| Parental | GTAITL-VTQYDIHLLHAIEEEIKKKLDD-FNVEEAKVLKILTQVNVVRRECEIKLEATDFDEKKEINKR |
| ..AI.L.V.Q..IHLLH...EEIKKKL...F...EAKVLKI.T..NVV..E.EIKLEATDFDEKKEINKR | |
| Retrocopy | SIAIAL<VIQ*NIHLLHSSQEEIKKKLYN<FDMVEAKVLKIFTPINVVQKE*EIKLEATDFDEKKEINKR |
| Parental | KQLILEGK-DPDLEAKRKAELAKI-RQKNRQF |
| K.LI.EG..D..LEAK.KAELA....QKN.QF | |
| Retrocopy | KKLIVEGE<DLNLEAKNKAELAQM<EQKNKQF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_362 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_362 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000011888 | 1 retrocopy |
retro_meug_362 ,
|
| Ornithorhynchus anatinus | ENSOANG00000004572 | 1 retrocopy |