RetrogeneDB ID: | retro_meug_306 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold100245:5235..5646(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RELL1 | ||
| Ensembl ID: | ENSMEUG00000004242 | ||
| Aliases: | None | ||
| Description: | RELT-like 1 [Source:HGNC Symbol;Acc:27379] |
Retrocopy-Parental alignment summary:
>retro_meug_306
GGAATGGACACCCATGTCGCCATTATACTAGTTCCAGTTTTCTTCATCATGGGACTTTTTGGAGTCTTTACTTTCCATCT
GCATAAGAAGAAGGCTATCAGTGTACAGCAGAAGCTAAACAAGATATTGAGGAAAAAGTTGAAAAGATATAATTGAATGG
CAGCAAACACAAGAATAGTGATACTAGTGAACAAACTGTCCATTTACATCATGAAAAATGAAGCAAATGCTGATGTTTCA
AAGGCCATGATGGAAGACAATAGCATCTGGGATCCTGAAAGCCCTTTGACTTCTAGCACTCCAGGCAGTCCTCCAATGAA
TGCTAGTACCTTGTCACCAGGAGGTACTCCACAAAAGCATATATGTAGCTACCATCTACATACTGTTTGAGGGGCAGTAG
AAAGATATGTT
ORF - retro_meug_306 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 70.5 % |
| Parental protein coverage: | 59.05 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | GHPEYVAIVLVPVFFIMGLFGVFICHLLKKK-GYRCTTEAEQDIAEKVEKIELNDSMNENSDTVGQIVH- |
| G....VAI.LVPVFFIMGLFGVF..HL.KKK.GY.CT.EA.QDI.EKVEKI.LN.S...NSDT..Q.VH. | |
| Retrocopy | GMDTHVAIILVPVFFIMGLFGVFTFHLHKKK<GYQCTAEAKQDIEEKVEKI*LNGSKHKNSDTSEQTVH> |
| Parental | YIMKNEANADVLKAMVADNSVCEPESPLTPSTPGSPPVSPGPMSPGGTPGKHVCGHHLHTVGGAVERDV |
| YIMKNEANADV.KAM..DNS...PESPLT.STPGSPP......SPGGTP.KH.C..HLHTV.GAVER.V | |
| Retrocopy | YIMKNEANADVSKAMMEDNSIWDPESPLTSSTPGSPPMNASTLSPGGTPQKHICSYHLHTV*GAVERYV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_306 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_306 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000004242 | 1 retrocopy |
retro_meug_306 ,
|