RetrogeneDB ID: retro_meug_295

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_9787:32709..33069(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PRTFDC1
• Ensembl ID: ENSMEUG00000000136
• Aliases: None
• Description: phosphoribosyl transferase domain containing 1 [Source:HGNC Symbol;Acc:23333]

Sequence

>retro_meug_295
GATTCTACCAGATTTAAGAGCTTCTGTAACGACCAGTCAACAGGGGACATAAAAGTAACTGGAAGCGATGATCTCTCAAC
CTTAACTGCAAAGAATGTCCTGATTGTTGAAGATATAATTGACACAGGGAAAACAATGCAGACTTTGCTTTCCCTGGTCA
AGCAGTATAATCCAAGGATGGTGAAAGTAGTCAGCTTGCTGGTGAAAAGGACCCCAAGAAGTGTGGGATATAGACCTGAC
TTTGTTGGATTTGAAATTCCAGACAAATTTGTCATTGGCTATGCCCTGGTCTACAATGAATACTTCAGAGACTTAACCCA
TATCTGTGTCATTAGTGAGACTGGCAAAGAAAAGTACAAA

Alignment

ORF - retro_meug_295 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.67 %
• Parental protein coverage: 53.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DFIRPKSYKNDQSLDDMQISGGDDFSELAGKNVLIVEDIVGSGRTMKSLLXXXXXXXXXXXXXXXLLVKR
          D..R.KS..NDQS..D....G.DD.S.L..KNVLIVEDI...G.TM..LL...............LLVKR
Retrocopy DSTRFKSFCNDQSTGDIKVTGSDDLSTLTAKNVLIVEDIIDTGKTMQTLLSLVKQYNPRMVKVVSLLVKR

Parental  SPGSDGFQPDYIGFEIPDLFVVGYALHYNEYFQDLNHICVISEQGKVKYR
          .P.S.G..PD..GFEIPD.FV.GYAL.YNEYF.DL.HICVISE.GK.KY.
Retrocopy TPRSVGYRPDFVGFEIPDKFVIGYALVYNEYFRDLTHICVISETGKEKYK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_295 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_295 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000012241	1 retrocopy	retro_etel_84,
Macropus eugenii	ENSMEUG00000000136	3 retrocopies	retro_meug_1887, retro_meug_2035, retro_meug_295 ,
Ochotona princeps	ENSOPRG00000016040	2 retrocopies	retro_opri_168, retro_opri_419,