RetrogeneDB ID: retro_meug_1976

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold76024:7963..8939(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM259
• Ensembl ID: ENSMEUG00000001455
• Aliases: None
• Description: transmembrane protein 259 [Source:HGNC Symbol;Acc:17039]

Sequence

>retro_meug_1976
GAGTGCATAGTGGAGTATTCCATGGAGTACAGTTTTTTACAATTGTCTCAGAGCACTCAGCAGTGCCTTAGCATCCCAGT
TTCGGTGGTGACACTGGACCCTATGAGGGATCAGTGCTTTGGAGACCAGTTTAGCCATTTGGTCCTGGATAAATTCCTGG
GTTATGATGATGTTTTGATGTCCAGCTTGAAAACCCTGACAGAAAATGAAGAGAACGAGGGTTTCCTGCACTGTGTTGTG
TCTGTGAAGCATTATCGCTTTGTCAGCATGTGGATGGTGAGGACTTTCTATCTGGCTGCCTTTGTCATTATGGTCATATT
TACTCTGTCACTCTCAGTGGTCCTGAGATATTCGCACCAGCAGATTTTGGTCTTTATTGTGGACCTCCTACAGAGGTTGG
AGATGAACATGACCATGGCTTTCCCTGCTGCACCCTTGCTCACAGTGATTTTGGCTCTTGTTGGTATGGAAGCCATCGTG
TCTGGATTCTTCAGCACCACCACAACAGCTTTCTATATCGTCCTCATCATGTGACTGGCTGACCAGTATGATGCCATCTG
TTACCACACCAACACCAGTAAGAGGCATTGGCTGAGGTTCTTCTACTTGTACCACTTTGCCTTTTTGCCTATCACTATCA
ATTCCATGGCTGTACAACAGTTTGGCCCTGGTCACTTCTTGGCTCATCATCCAGCATTCTATGATCTACTTTTTTCATTA
TTTTGAGTTGCCAGTCATCCTCCAGCAGATCTGCATCCGGGAGATGTTGCTGCAGAACCAGCAGATTGGCCAGGGCACCC
AAACAGCCCTACAGGATAATCTCAACAATAATACTACAGCCACAGCTGTGACCCCTGGGAGCCCCATTCCCTCTCTACAG
GAAGGGAGAAGCAGCCAGCCAGTCCCTGGGTAGGGACCTGGCCCCACTTCTGCCTCTGTAGGAGATGAACTGAACTAAAT
AGATGAGACAGCCACT

Alignment

ORF - retro_meug_1976 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.66 %
• Parental protein coverage: 62.43 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  EYIVEYSLEYGFLRLSQSTRQRLSIPVMVVTLDPTRDQCFGDRFSRLLLDEFLGYDDVLMSSVKALAENE
          E.IVEYS.EY.FL.LSQST.Q.LSIPV.VVTLDP.RDQCFGD.FS.L.LD.FLGYDDVLMSS.K.L.ENE
Retrocopy ECIVEYSMEYSFLQLSQSTQQCLSIPVSVVTLDPMRDQCFGDQFSHLVLDKFLGYDDVLMSSLKTLTENE

Parental  ENKGFLRNVVSGEHYRFVSMWMARTSYLAAFVIMVIFTLSVSMLLRYSHHQIFVFIVDLLQMLEMNMTIA
          EN.GFL..VVS..HYRFVSMWM.RT.YLAAFVIMVIFTLS.S..LRYSH.QI.VFIVDLLQ.LEMNMT.A
Retrocopy ENEGFLHCVVSVKHYRFVSMWMVRTFYLAAFVIMVIFTLSLSVVLRYSHQQILVFIVDLLQRLEMNMTMA

Parental  FPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWLADQYDAICCHTNTSKRHWLRFFYLYHFAF-Y
          FPAAPLLTVILALVGMEAI.S.FF..TTTAFYI.LI..LADQYDAIC.HTNTSKRHWLRFFYLYHFAF..
Retrocopy FPAAPLLTVILALVGMEAIVSGFFSTTTTAFYIVLIM*LADQYDAICYHTNTSKRHWLRFFYLYHFAF<F

Parental  AYHYRFNG-QYSSLALVTSWLFIQHSMIYFFHHFELPAILQQIRIQEMLLQNQQIGQGTQTALQDNLNNN
          AYHY.F.G..Y.SLALVTSWL.IQHSMIYFFH.FELP.ILQQI.I.EMLLQNQQIGQGTQTALQDNLNNN
Retrocopy AYHYQFHG<LYNSLALVTSWLIIQHSMIYFFHYFELPVILQQICIREMLLQNQQIGQGTQTALQDNLNNN

Parental  TAAAAVAP-APGPLYRMATVASP-PGEGPGPTSASVGGELNWMAETAT
          T.A.AV.P..P.P.........P.PG.GPGPTSASVG.ELN...ETAT
Retrocopy TTATAVTPGSPIPSLQEGRSSQPVPG*GPGPTSASVGDELN*IDETAT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1976 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1976 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000001455	1 retrocopy	retro_meug_1976 ,