RetrogeneDB ID: retro_meug_1965

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold75222:3562..4270(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CAMLG
• Ensembl ID: ENSMEUG00000013676
• Aliases: None
• Description: calcium modulating ligand [Source:HGNC Symbol;Acc:1471]

Sequence

>retro_meug_1965
CAGAAGAAGCAAACACAGAATCAAAGCAGCATGACTGATAAGCTGAACTCCCTCCCTGTTCCTTCAGTTTCAAAGCGAGT
GGTGCTGGGTGATTCCACTAGCACAGGAACAACGGACCACCAGAGTGGCATTACAGAGAACAGGGGAACCTAAATGACAG
AAAAAAGGACTCCTTAATCAATCCATCTGAGAGTCGTAGTGATAGTAACCTTGAATTCTGTCATCGAAATAGAGGGGATC
TTTTAACCAAACTGTCCAGAGAAGCTGCCAGAATCACTTAGACCAGTATCTTGTCATATTTGATGAAGCAATGAAATTAA
GAAAACAGTTGATTAGTGAGAAACCTAGTCAAGAGAATGGAAGTACAGGGGAAAAATTTGACACTTTCCGAATTTTCAGA
TTGGTGAGATGTGCTCTCCTTGCCCTTAGAGTTCGGGTTTTTGTTTGCAAATATCTGTCCACAATTTGCTCCATTTCTTA
CTTTGCAACTTGCATGAGATTAACTAAGTACTTCAAAAAGAGTGAAAAGAAGGTGAAGATGACAGTACTAACTGCTGCAT
TTTTATTGTCTGAAATACCAACTGAAGTAATCAGTTGTTCTGTGGATGCCTATAGCAAAATGGGAGATGTTTCACAGACC
TTTGTGTCTACTTTTTCACTGTCATCTTCTGTCATGAACTGCTTACTTTTTAGGGCTGTGAAGTTCCA

Alignment

ORF - retro_meug_1965 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.96 %
• Parental protein coverage: 80.68 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  EEANTEAKQRDSDKLNSLPVPSVSKRVVLGDTTSTGTVDHQGGITEIKGTQLIDK-KDSLIHPLESSSDS
          ....T.......DKLNSLPVPSVSKRVVLGD.TSTGT.DHQ.GITE..GT....K.KDSLI.P.ES.SDS
Retrocopy QKKQTQNQSSMTDKLNSLPVPSVSKRVVLGDSTSTGTTDHQSGITENRGT*MTEK<KDSLINPSESRSDS

Parental  SLELRHRKRGDLTT-ETVQRSPQHGLDQYLSRFDEAMKLRKQLISEKPSQENGSSGEEFDTFRIFRLVGC
          .LE..HR.RGDL.T..TVQRS.Q..LDQYL..FDEAMKLRKQLISEKPSQENGS.GE.FDTFRIFRLV.C
Retrocopy NLEFCHRNRGDLLT<QTVQRSCQNHLDQYLVIFDEAMKLRKQLISEKPSQENGSTGEKFDTFRIFRLVRC

Parental  ALLALGVRAFVCRYLSI-FAPFLTLQLAFMGLSK-YFPKSEKKVKTTVLTAALLLSGIPAEVISRSMDTY
          ALLAL.VR.FVC.YLS..FAPFLTLQLA...LS........K...T....A.LL.S.IP.EVIS.S.D.Y
Retrocopy ALLALRVRVFVCKYLST>FAPFLTLQLA*D*LST<FKKSEKKVKMTVLTAAFLL-SEIPTEVISCSVDAY

Parental  SKMGDV-FTDLCVYFFTFIFCHELLVFWGCEVP
          SKMGDV.FTDLCVYFFT.IFCHELL.F.GCEVP
Retrocopy SKMGDV<FTDLCVYFFTVIFCHELLTF*GCEVP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1965 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1965 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013676	1 retrocopy	retro_meug_1965 ,
Monodelphis domestica	ENSMODG00000014251	1 retrocopy	retro_mdom_758,
Otolemur garnettii	ENSOGAG00000003580	1 retrocopy	retro_ogar_2062,