RetrogeneDB ID: retro_meug_1876

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold67975:3281..3851(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANKRD54
• Ensembl ID: ENSMEUG00000013953
• Aliases: None
• Description: ankyrin repeat domain 54 [Source:HGNC Symbol;Acc:25185]

Sequence

>retro_meug_1876
CTCAAAAAGCTGAGAGAAGCCGCCAACACCAACGACTTGGAAACGGTGCGACAGCTGCTGGAGGAAGGAGTCGATCCTAG
TGCGGCGGACGACAAAGGCCGCACCCCCCTGCACTTGGCGTCCAGCAACGGTAATGACCAGATCGTGCAGCTGCTCCTGA
GCCACGGGGCCGATCCGGACCAGCGAGATGGGCTGGGGAACACCGCTCTGCATTTGGCTGCCTGCACCAACCACATTCCC
GTCGTCACAACGCTGCTCCGAAGAGGGGCCCTGGTAGAATCTCTAGACCGAGCCGGCAGGACCCCCCTGCACCTTGCCAA
ATCGAAGCTGAGTAGCCTGCAAGAGGGAAATTCCCAGTGCTTGGAGGCTGTCCGACTGGAGGTGAAGCAGATCATATTGA
TGCTCAAAGAGTACCTGGAGCGACTCGGCCAGCACGAGCAGAGCGTCCGGCTGGATGACCTCTGCAAGCGTCTCCAGACG
ACAAGCACCAAAGAGCAGGTAGAAGAGGTGACCGAACTCCTGGCCAATTTGACCTCGCTCAGCCTGCAGATGCAGAAGAT
GGAGAAGAGG

Alignment

ORF - retro_meug_1876 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.11 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LKRLRESANANDLETVQQLLEDGVDPCAADDKGRTALHFASCNGSDQIVQLLLDHGADPNQRDGLGNTPL
          LK.LRE.AN.NDLETV.QLLE.GVDP.AADDKGRT.LH.AS.NG.DQIVQLLL.HGADP.QRDGLGNT.L
Retrocopy LKKLREAANTNDLETVRQLLEEGVDPSAADDKGRTPLHLASSNGNDQIVQLLLSHGADPDQRDGLGNTAL

Parental  HLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQEGHSQCLEAVRLEVKQIIQMLREYLE
          HLAACTNH.PV.TTLLR.GA.V..LDRAGRTPLHLAKSKL..LQEG.SQCLEAVRLEVKQII.ML.EYLE
Retrocopy HLAACTNHIPVVTTLLRRGALVESLDRAGRTPLHLAKSKLSSLQEGNSQCLEAVRLEVKQIILMLKEYLE

Parental  RLGQQEQRDRLDDLCTRLQMTSTKEQVDEVTDLLASFTSLSLQMQKLEKR
          RLGQ.EQ..RLDDLC.RLQ.TSTKEQV.EVT.LLA..TSLSLQMQK.EKR
Retrocopy RLGQHEQSVRLDDLCKRLQTTSTKEQVEEVTELLANLTSLSLQMQKMEKR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1876 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1876 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000008711	1 retrocopy	retro_meug_1311,
Macropus eugenii	ENSMEUG00000013953	1 retrocopy	retro_meug_1876 ,
Macaca mulatta	ENSMMUG00000015254	2 retrocopies	retro_mmul_2397, retro_mmul_2444,
Sarcophilus harrisii	ENSSHAG00000009125	1 retrocopy	retro_shar_66,