RetrogeneDB ID: retro_meug_1865

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold6706:9559..10726(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000001811
• Aliases: None
• Description: None

Sequence

>retro_meug_1865
GAAATAAAACAGCTTCATCAAGCTATAGAAAAAGATGATAAGGAACATTCCCAAATCAGGGAACAAGAATCACACATGCA
GCAAATACTGAATAATGAACGAAGACAGCTAGAGCAACTAAAAGACTGTAAATCTGAGCCACTAAAACGATTTGGATCCC
TGATTCCTGCCCTTCTTGAGGCTATAGAAGATGCCCATAGACAGGGTCTCTTTACTTACAAACCTATAGGCCCTCTGGGA
GCTTGTATTCGTGTTCGGGACCCTGAATTTTCTTTGGCTATTGAGTCCTGCTTAAAGGGCCTTCTTTCTGCCTTTTTTTG
TGACAACCACAATGATGAGCAAATCCTCCAGGGGCTGATGAAAAAGCTTTATCCATCAGGCTCTTCACGACCACAGATAA
TTATTTCAGCATTTGACTGTGAAGCTTATGATGTAACAGATAGAATGGCTTATCACCCAGAATTTCCCACAGTTCTCACT
GCTTTAGAAATAGATGATACAGTGGTGGCCAATACTTTGATTGACATGAGGGGCATAGAATCAGTGCTGCTTATTAAAAA
CAAGTCTTTGGCTTGTACAGTGATGCAGGCTCAGAGACCCCCCAAGAACTGTACCAAAGTTTTAACTGCTGATGGTGACC
AAGTGTTTGAGCGACACTATTACGCATGTGAAGAATTGAGACCTGTTTTCTTGGGTGATGTAGAATTAGAAATAAGTAAT
TTGGAGAAAGATGTGGAAAAGAAAGTAGAACAGTTGTCAACATTTCAGCAGCATGTGTGTTCACTTGAAAATGATGTCAG
GAAGAATCGAGAAACTATTGATAGTCATTATCAAAATTTGAAAGAGATAAAGGTTAAAGTAATAAGTTTTACTTCAGAAA
TAAAAGAGCTTGAGGAAGAAGAACAAAACCAGTCAATAGATATCTCAATTCTGGAAGAAGAAGCTCAGGAAATTAAGGAA
GAGATAAAAGAAGCTGAAGAAAAGATGAAAATTCGAAGGGAAGAGATGGAGAAATTAAGGCAGCCAAAAATAGATGCTGA
ACAGAGACATGAAGAGCTTAAGTTGAAATACAATCAAGTTTCAGAGTTAGTAGAATCCATCAGGGGAGAACGAAACCAGG
CTGCTTTAGAAGTGGACACCCAACACCAATCCGTGCTACATTATGAA

Alignment

ORF - retro_meug_1865 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.67 %
• Parental protein coverage: 59.75 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EIKQLHQSIEKDDKEHSQVREEVSYVQQILNDDQRQLDRLKDCKSEPLKLFGSQMPALVEAVKDAHRQGH
          EIKQLHQ.IEKDDKEHSQ.RE..S..QQILN...RQL..LKDCKSEPLK.FGS..PAL.EA..DAHRQG.
Retrocopy EIKQLHQAIEKDDKEHSQIREQESHMQQILNNERRQLEQLKDCKSEPLKRFGSLIPALLEAIEDAHRQGL

Parental  FTYKPL--VHACIRLRDPDYALAIECCLKGLLXXXXXXXXXXXXXLQELIKKFYPSGSPRPQIMVSAFEC
          FTYKP.....ACIR.RDP...LAIE.CLKGLL.............LQ.L.KK.YPSGS.RPQI..SAF.C
Retrocopy FTYKPIGPLGACIRVRDPEFSLAIESCLKGLLSAFFCDNHNDEQILQGLMKKLYPSGSSRPQIIISAFDC

Parental  ELYDVTDRAPYHPEFPTALTALEIDDAVVANTLIDMTGIESVLLIKNNSVARKLVIPHGPPKNCTKVLTA
          E.YDVTDR..YHPEFPT.LTALEIDD.VVANTLIDM.GIESVLLIKN.S.A........PPKNCTKVLTA
Retrocopy EAYDVTDRMAYHPEFPTVLTALEIDDTVVANTLIDMRGIESVLLIKNKSLACTVMQAQRPPKNCTKVLTA

Parental  CGDEVFQGRYYSCEESRPTYLGDMEVEISNLEKDVENKMARLSTFQQHVCSLEKAIKKNRETIDSHYQHL
          .GD.VF...YY.CEE.RP..LGD.E.EISNLEKDVE.K...LSTFQQHVCSLE....KNRETIDSHYQ.L
Retrocopy DGDQVFERHYYACEELRPVFLGDVELEISNLEKDVEKKVEQLSTFQQHVCSLENDVRKNRETIDSHYQNL

Parental  KEIKEDEAQEIQEEMKEVGEKLKTRKEEM----ENLRKPKVEAEQRHEELKLKRNQVSELMESLIE-EQN
          KEIK.........E.KE..E.............E.....K.E.....E..K..R.....L....I..EQ.
Retrocopy KEIKV-KVISFTSEIKELEEEEQNQSIDISILEEEAQEIKEEIKEAEEKMKIRREEMEKLRQPKIDAEQR

Parental  QTVLEVETKHQSMLHYDSRLKEHLDSLQVKKEEMAMKERE
          ...L.......S.L....R.......L.V..........E
Retrocopy HEELKLKYNQVSELVESIRGERNQAALEVDTQHQSVLHYE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1865 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1865 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000001811	2 retrocopies	retro_meug_1865 , retro_meug_1888,