RetrogeneDB ID: retro_meug_1853

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold66232:8462..9249(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000013232
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ASB6
• Ensembl ID: ENSMEUG00000007753
• Aliases: None
• Description: ankyrin repeat and SOCS box containing 6 [Source:HGNC Symbol;Acc:17181]

Sequence

>retro_meug_1853
TTGGAGAGGGAGGCGCATTCCCCTTTTTACCAGGAAGGTGTGAGCTATTCCTTGCTGAAGATGGCAGAGCTGGGCTGACA
CATGAGGCTGACACCCTGTTGCAGAATGGAGCTAACCTCAACTTTGAAGATCCTGTCACTTACTACACTGCTCTGCACAT
TGCTGTCCTCCGAAATCAACTGACATGGTAGAGCTGCTGGTGCATCATGGGGCTGACATTAACAGAAGAGACCGGATCCA
TGAGAGCAGTCCCCTGGACTTGGCCAGTGAGGAACCTGAACGGCTGCCCTGCTTGCAACGACTTCTGGACCTTGGGGCTG
ATGTTAATGCAGCTGACAAGCATGGAAAGACAGCTTTGCTTCATGCGCTAGCCAGTAGCGATGGGGTCCAAATCCATAAC
ACTGAGAATATCCGGCTCTTGTTGGAAGGAGGAGCAAATGTAAAGGCCACCACCAAAGATGGTGACACAGTCTTTACATG
CATCATCTTCCTGCTTGGTGAAACAGTGGGAGGGGACAAAGAGGAAGCCCGTATGATCAACCGGTTCTGCTTCCGTGTCA
CTCAGCTGCTACTGGCTCATGGAGCAGACCCTAGTGAATGCCCACCCCATGAATCTCTCACTAATATCTGCCTCAAGAAC
TTTAAGCTACACTTTCCACTCTTGTGTTTCCTTCTGGAATCTGGAGTCTCCTACAATTGCTCCCTTCACGGCCCATCTTG
CTGGTCTGGCTTCCATATTATCTTTGAGAGACTCTGTTCCCACCCAGGCTGCCCTGAAGATGAAAGC

Alignment

ORF - retro_meug_1853 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.49 %
• Parental protein coverage: 82.7 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LEREAHSPFYQEGVSYSLLKMAELG-LTHAADTLLQNGANLNFEDPVTYYTALHIAVLRNQ-PDMVELLV
          LEREAHSPFYQEGVSYSLLKMAELG.LTH.ADTLLQNGANLNFEDPVTYYTALHIAVLRNQ..DMVELLV
Retrocopy LEREAHSPFYQEGVSYSLLKMAELG<LTHEADTLLQNGANLNFEDPVTYYTALHIAVLRNQ<TDMVELLV

Parental  HHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENI
          HHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENI
Retrocopy HHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENI

Parental  RLLLEGGANVKATTKDGDTVFTCIIFLLGETVGGDKEEARMINRFCFRVTQLLLAHGADPSECPPHESLT
          RLLLEGGANVKATTKDGDTVFTCIIFLLGETVGGDKEEARMINRFCFRVTQLLLAHGADPSECPPHESLT
Retrocopy RLLLEGGANVKATTKDGDTVFTCIIFLLGETVGGDKEEARMINRFCFRVTQLLLAHGADPSECPPHESLT

Parental  NICLKNFKLHFPLLCFLLESGVSYNCSLHGPSCWSGFHIIFERLCSHPGCPEDES
          NICLKNFKLHFPLLCFLLESGVSYNCSLHGPSCWSGFHIIFERLCSHPGCPEDES
Retrocopy NICLKNFKLHFPLLCFLLESGVSYNCSLHGPSCWSGFHIIFERLCSHPGCPEDES

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1853 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1853 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007753	1 retrocopy	retro_meug_1853 ,
Procavia capensis	ENSPCAG00000013086	2 retrocopies	retro_pcap_264, retro_pcap_381,