RetrogeneDB ID: retro_meug_1798

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold59730:5798..6186(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PAQR3
• Ensembl ID: ENSMEUG00000014552
• Aliases: None
• Description: progestin and adipoQ receptor family member III [Source:HGNC Symbol;Acc:30130]

Sequence

>retro_meug_1798
CGGATCTGTATGCTTTGTTCTGTAGGCTATCATCTTTTTTCTTGTCATCGTTCAGAAAAAAACCTGTAGATGATGGATGG
CATTAGATTATGCAGGAATCTCTGTTGGCCTACTGGGATGTTGTGTGTCTGGAATATTATGTGCATTTTATTGTAATAAT
TACTGGCATCAAGTCTGTCTTGTGCTTTCTGTGATCCTCACCGACTTTCTTGCTCAGATTCATCCCAATTATCTCACTCA
ACCTTGGCACAGGCTTCGTTCTATCATCTTTTGTTTGGTGTCTGGGTATGTAGTGATTCTAACTCTTCACTAGGTCTGGC
TCAATGGAGGTGTTGGTGTGCCTATCATACAGGAGTTTGTACCTTCTGTGATTGTGATATATGTGATT

Alignment

ORF - retro_meug_1798 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.27 %
• Parental protein coverage: 52.61 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QVCMLCSVGYHLFSCHRSEK-TCRRWMALDYAGISVGILGCYVSGVFYAFYCNNYWRQVYLIMVLAMILT
          ..CMLCSVGYHLFSCHRSEK.TCR.WMALDYAGISVG.LGC.VSG...AFYCNNYW.QV.L..VL..ILT
Retrocopy RICMLCSVGYHLFSCHRSEK>TCR*WMALDYAGISVGLLGCCVSGILCAFYCNNYWHQVCL--VLSVILT

Parental  VFFAQIHPSYLTQQWHRLRSIIFCSVSGYGVIPTIHWVWLNGGVGAPIVQEFAPRVIVMYMI
          .F.AQIHP.YLTQ.WHRLRSIIFC.VSGY.VI.T.H.VWLNGGVG.PI.QEF.P.VIV.Y.I
Retrocopy DFLAQIHPNYLTQPWHRLRSIIFCLVSGYVVILTLH*VWLNGGVGVPIIQEFVPSVIVIYVI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1798 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1798 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000001349	1 retrocopy	retro_meug_1124,
Macropus eugenii	ENSMEUG00000014552	1 retrocopy	retro_meug_1798 ,
Macropus eugenii	ENSMEUG00000015439	1 retrocopy	retro_meug_516,