RetrogeneDB ID: retro_meug_1744

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold56207:8299..8747(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FBXO3
• Ensembl ID: ENSMEUG00000006623
• Aliases: None
• Description: F-box protein 3 [Source:HGNC Symbol;Acc:13582]

Sequence

>retro_meug_1744
TATGCTACTCTTTAAAAAGCCTGGGATGACCTGGAAGATACTTGGGGCAGAGGTGTCCAAGGATGATCGGATCTCTGAAA
AACAGCGTGGAGGAACCGAAGCTGGATGCCGTGGAAGTGCAGATTGGGTGCAAGCTTCCCAATGACTACTGCTGCTCCTT
TAGGATCCACAATGGGCAGAAGCTGGTGGTTCCCAGGTTGGTGGGAAGCACAGCCCTTTCCAATGAAGACCGCTCCAAGG
ATTTGCTGACATCGACACGGCTGCAGGTGGATTCCAGCAGACGCAGGGTCTGAAGTGGTGTCTTCCCCTCACTTTCTGCA
CACACACTGGCCTGAGTCAGTATATTGCATTGGAAAGTGTAGAAGGCTGCAACAAGTACGATATCTTCTATCAGTGTCCA
GACCAGATGGCTCGGAATCCGTCAGCAATTTGTATGTTTATTACAGGT

Alignment

ORF - retro_meug_1744 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.21 %
• Parental protein coverage: 50.68 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  YATL-KVWYDLE-KYLGCRYPQMIRSLKXXXXXXXXDTMEVQIVFKLFNDYHSSFWIHNGQKLVVPRLMR
          YATL.K.W.DLE..YLG.R.P.MI.SLK........D..EVQI..KL.NDY..SF.IHNGQKLVVPRL..
Retrocopy YATL*KAWDDLE<RYLGQRCPRMIGSLKNSVEEPKLDAVEVQIGCKLPNDYCCSFRIHNGQKLVVPRLVG

Parental  GMALYSHYCSEDLL-NIYTATGGFQQRQGLKQCLLLTFCIHTGLSQYMVLESVEGRNKYEIFYPCPASYS
          ..AL.....S.DLL..I.TA.GGFQQ.QGLK.CL.LTFC.HTGLSQY..LESVEG.NKY.IFY.CP....
Retrocopy STALSNEDRSKDLL<DIDTAAGGFQQTQGLKWCLPLTFCTHTGLSQYIALESVEGCNKYDIFYQCPDQMA

Parental  EWFTSVHNVVTG
          ..........TG
Retrocopy RNPSAICMFITG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1744 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1744 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000006623	2 retrocopies	retro_meug_1744 , retro_meug_857,
Ictidomys tridecemlineatus	ENSSTOG00000016405	1 retrocopy	retro_itri_1755,