RetrogeneDB ID: retro_meug_1676

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold52376:12863..13525(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ASB9
• Ensembl ID: ENSMEUG00000002950
• Aliases: None
• Description: ankyrin repeat and SOCS box containing 9 [Source:HGNC Symbol;Acc:17184]

Sequence

>retro_meug_1676
CTGATACATGATTTTGCGCCTGATTGGTCTCCCATGCATGATGTTGCTATTAATGGATGTCTCCTTTCTCTAAGGATGCT
CATCAGTCAGGAATATGGTGTAAACCTCATTACAGCTGATCCAGGGTCTCCACTTCATGAAGCTTGCCTAGAGAGTCACT
CGACTTGCACTGGTGCTCTGCTGAAGCATGGGATTAAGATGGATGGAGTGACTGTTGATTGGCACATGGCTCTGTACAGT
GCCTGTGTTAGTAGAAGCCAGGACTGTGTGGACTTACTGTTAGAACATGGAGTGAGTCCCCATGCTGTGCATGAGCTTGC
ATCTCCCACCCACAAAGCTGCCAAGGGAGGTCACCTGGGATATATGGAATCCCTTGTATCTCATGGAGCAAATATAAATG
AAAACATCAGACACCTTGGCACTCCACTTTATGTGGCTTGTGAAAATCAGCAGACAGTCTGTGCCAAGAGCCTGCTTGAA
TCACGAGCAAATGCTAATCAAGGAAAGGAGCTGGATTCTCCTCTTCATGTGGCAGTCAGGAATTCCAGTTCAGACCTGGA
TCATTCGCTGATAGATTTCGGAACAGAGCCGCACTTAAAGAATGTGGAAGGCAATCAGTCGTTGGTTCCTCAAATAGTAC
CCTAGCACAAGTATTCCCAGAA

Alignment

ORF - retro_meug_1676 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.79 %
• Parental protein coverage: 75.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LMSDFVSDWSPMHDAAVNGRLLSLRMLISQGYGVNLITADRVSPLHEACLGGHSTCAGVLLKHGAQVDGV
          L..DF..DWSPMHD.A.NG.LLSLRMLISQ.YGVNLITAD..SPLHEACL..HSTC.G.LLKHG...DGV
Retrocopy LIHDFAPDWSPMHDVAINGCLLSLRMLISQEYGVNLITADPGSPLHEACLESHSTCTGALLKHGIKMDGV

Parental  TVDWHTPLYNACVSGSQDCVNLLLEHGASPHAVCDLASPIHEAAKRGHLGCMESLVSHGANINENIRHLG
          TVDWH..LY.ACVS.SQDCV.LLLEHG.SPHAV..LASP.H.AAK.GHLG.MESLVSHGANINENIRHLG
Retrocopy TVDWHMALYSACVSRSQDCVDLLLEHGVSPHAVHELASPTHKAAKGGHLGYMESLVSHGANINENIRHLG

Parental  TPLYVACENQQIACAKRLLEAGANVNEGKELDSPLHVAARNSSSDLVHLLIDFGAEPHSKNAEGKRPVDL
          TPLYVACENQQ..CAK.LLE..AN.N.GKELDSPLHVA.RNSSSDL.H.LIDFG.EPH.KN.EG.....L
Retrocopy TPLYVACENQQTVCAKSLLESRANANQGKELDSPLHVAVRNSSSDLDHSLIDFGTEPHLKNVEGNQ--SL

Parental  VP-PNSTIAQVFSQ
          VP..NST.AQVF..
Retrocopy VP<SNSTLAQVFPE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1676 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1676 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000002950	1 retrocopy	retro_meug_1676 ,
Pongo abelii	ENSPPYG00000020140	1 retrocopy	retro_pabe_1269,