RetrogeneDB ID: retro_meug_142

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_4153:153780..154812(+)
• Located in intron of: ENSMEUG00000000472

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000016113
• Aliases: None
• Description: None

Sequence

>retro_meug_142
GAAAGAGAAGTGGTATGTGAGGATGAAGACGCTTTCTGCCTGTCATTGGAGAACGTAGCTGCACTACAGACACTTCTCCA
ACAGCTGGAATTACAGAAAGCTCAGAATGAAGCTGTGTGTGATGGTCTACGATCTCGAATCAGAGAACTCTGGGACAGAT
TACAAACAGCCCCTGAGGAGAGAGAGGCCCTAGCCATGTTCATGACTGGATCAAAGGCCAAGATAAGGAAGACGCTGCAG
TCAGAAGTAGATCAACTGGAGGAGCTAAAGATTCAAAATATGAGGAAAGTGATTGAAGCAATCTGGGTGGAGCTAGCTCT
GTATTGGGAAAAGTGCTTCTATAGCCAGGAGCACAGACAAGCCTTTGCCCCCTATTTTGATGAGGATTACACAGAGACAC
TGCTCCAGCTCCATGATGTGGAACTTGTGGAACTGAAGCATTACTACGAGACTCACAAAGAACTGTTTGAAGGTGTTCAG
AAGTGGGAAGACAGCTGGAAGTGTTTCTTAGAATTTGAGAGGAAAACTTCAGATTGGAGCCGATTCACAAATAGAGGTGG
AAATCTCCTGAAAGAAGGGAAGCAAAGAGCCAAGCTCCAAAAAACTCTTCCTAAGCTGGAAGAAGAGTTGAAGACAAGGA
TTGAACTGTGGGAGCAGGAGCACTCAAAGGCCTTCGAGGTGAATGGGCAGAAGTTCATGGAGTACGTGATGGAGCAGTGG
GAGATGCATCGTTTGGAGAAAGAGAAAGCCAAGCAGGAGAGACCGCTCAAGAAGACCCAGCAAACAAAAACAGAGATGCT
CTATGGACCCAGGGCACCCAGCAAGAGGCAAGTGCTGGGCCCCAACACGCCAGGAAAAGTCTGAAAGCTTAATCCCACCA
CAGCCACTCCCAATAGCACCATCCGCTCTGTCTTCGGTGGGACTGTCTACCACTTCCCAGTGCCCCACCTTCCATCTGCT
AGAGGCAAGCCATCCAAGACTTGCAGCCGTTTGGGGCAGAGGACAGCCCCTCTGGGCAGACAGGGACACAAC

Alignment

ORF - retro_meug_142 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.71 %
• Parental protein coverage: 58.45 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EKDVLCEDEDASDLSLEKLTTLHDVLHQIEVLRAGNEIVCEDRHSQIPMLWDKLQV-PYDREALATFMMG
          E..V.CEDEDA..LSLE....L...L.Q.E...A.NE.VC....S.I..LWD.LQ..P..REALA.FM.G
Retrocopy EREVVCEDEDAFCLSLENVAALQTLLQQLELQKAQNEAVCDGLRSRIRELWDRLQTAPEEREALAMFMTG

Parental  SIAKGRSKEGNTIQSTADGLEERKIQKLKSAIEAVREKLALYWGRCFSNQEQKEAFVHY-DEDYTETLLQ
          S.AK.R.....T.QS..D.LEE.KIQ.....IEA....LALYW..CF..QE...AF..Y.DEDYTETLLQ
Retrocopy SKAKIRK----TLQSEVDQLEELKIQNMRKVIEAIWVELALYWEKCFYSQEHRQAFAPYFDEDYTETLLQ

Parental  LHDAELVELKHYYETHKEV-EG-QKWEDSWKLFLEFERKASDPSRFTNRGGNLLKEEKQRAKLQKTLPKL
          LHD.ELVELKHYYETHKE..EG.QKWEDSWK.FLEFERK.SD.SRFTNRGGNLLKE.KQRAKLQKTLPKL
Retrocopy LHDVELVELKHYYETHKELFEGVQKWEDSWKCFLEFERKTSDWSRFTNRGGNLLKEGKQRAKLQKTLPKL

Parental  EEELKTRIELWEQEHSKAFEVNGQKFMEYVMEQWEMHRLEKEKAKQERQLKKTQQTETEMLYGSTPRTPS
          EEELKTRIELWEQEHSKAFEVNGQKFMEYVMEQWEMHRLEKEKAKQER.LKKTQQT.TEMLYG..PR.PS
Retrocopy EEELKTRIELWEQEHSKAFEVNGQKFMEYVMEQWEMHRLEKEKAKQERPLKKTQQTKTEMLYG--PRAPS

Parental  KRRVLGPNTPGKVRKLNSTTATPNSTIRSVFGGTVYHSPVPRLPPAGGKPSKTPSRLGQRTAPLGRQGHN
          KR.VLGPNTPGKV.KLN.TTATPNSTIRSVFGGTVYH.PVP.LP.A.GKPSKT.SRLGQRTAPLGRQGHN
Retrocopy KRQVLGPNTPGKV*KLNPTTATPNSTIRSVFGGTVYHFPVPHLPSARGKPSKTCSRLGQRTAPLGRQGHN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_142 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_142 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000016113	1 retrocopy	retro_meug_142 ,