RetrogeneDB ID: retro_meug_1373

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold383965:50..1196(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CDC37
• Ensembl ID: ENSMEUG00000002278
• Aliases: None
• Description: cell division cycle 37 [Source:HGNC Symbol;Acc:1735]

Sequence

>retro_meug_1373
ATGGTGGATTACAGCGTGTGGGACCACATCGAGGTGTCAGACGATGAGACGAGACGCACCCCAACATCGACACGGCCAGC
CTCTTCCGCTGGCAGCACCAGGCACGAGTGGAACGCATGGAGCAATTTCAGAAGGAGAAGGAGGAGCTAGATAAAGGATG
TAGGGAGTGTAAGCGGAAAGTGGCCGAATGTCAGCGGAAACTGAAGGAGCTGGAGGTGGCCAAGCCCAAAGGTGGCCAAG
CAGAGGTACAGCGACTCCAGGCAGAGGCCCAGCAGCTGCGGAAGGAGGAAAAGAGCTGGGAGCAAAAGCTTGATGAACTG
CGCAAGAAGGAGAAAAACATGCCGTGGAATGTAGACACGCTGAGCAAGGATGGCTTCAGCAAAAGTGTGTTCAATATTAA
GCCAGACAAGGAGGAAGATTCTGAGGAACAGAAAGAACAGAAGCACAAGACCTTTGTAGAGAAGCATGAGAAGCAGATTA
AGCACTTTGCCATGCTTTGGCGCTGGGATGACAGCCAGAAGTACCTATCTGAAAACCCACACCTGGTCTGCGAGGAAACT
GCCAACTACCTGGTCATCTGGGGCATTGACCTAGAAGTGGAAGAGAAATGTGCCCTCATGGAGCAAGTGGCTCATCAGAC
AATTGTTATGCAATTCATTCTGGAGCTGGCCAAGAGCTTAAAGGTGGATCCCCGCGCCTGCTTCAGACAATTCTTCACCA
AAATCAAGACAGCCGACCAGCAGTACATGGAAGGCTTCACAGATGAGCTAGAGTCCTTCAAAGAGCGGGTGAGAGGCCAT
GCCAAAGTGCGGATTGAGAAAGCTATGAAGGAGTATGAGGAGGAAGAGCGGAAGAAGCGACTGGGCCCCGGGGGTCTAGA
CCCCGTGGAGGTCTATGAGGCACTGCCCTGTGGAGCTCCAGAAATGATTTGACATTAAGGACATACAGATGCTTCAAGAC
ACCATCAGCAAAATGGACCCTGCGGAAGCAAAATATCACATGTAGCGTTGCATCGACTCAGCCTTCTGGGTCCCCAATGC
AAAGGCAGCCGGAGGGCAGGAGAAAGGAGAAGATGAAGCCCCAGCTTCAGACCTTGTGGGTGAGGCCAGGAAGGGCAGGG
TCGAAGAAGAGGAGAAAGGCAACGTC

Alignment

ORF - retro_meug_1373 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.05 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MVDYSVWDHIEVSDDE-DETHPNIDTASLFRWRHQARVERMEQFQKEKEELDKGCRECKRKVAECQRKLK
          MVDYSVWDHIEVSDDE.DETHPNIDTASLFRW.HQARVERMEQFQKEKEELDKGCRECKRKVAECQRKLK
Retrocopy MVDYSVWDHIEVSDDE<DETHPNIDTASLFRWQHQARVERMEQFQKEKEELDKGCRECKRKVAECQRKLK

Parental  ELEVAEPKGGQAEVQRLQAEAQQLRKEEKSWEQKLDELRKKEKNMPWNVDTLSKDGFSKSVFNIKPDKEE
          ELEVA.PKGGQAEVQRLQAEAQQLRKEEKSWEQKLDELRKKEKNMPWNVDTLSKDGFSKSVFNIKPDKEE
Retrocopy ELEVAKPKGGQAEVQRLQAEAQQLRKEEKSWEQKLDELRKKEKNMPWNVDTLSKDGFSKSVFNIKPDKEE

Parental  DSEEQKEQKHKTFVEKHEKQIKHFGMLRRWDDSQKYLSENPHLVCEETANYLVIWCIDLEVEEKCALMEQ
          DSEEQKEQKHKTFVEKHEKQIKHF.ML.RWDDSQKYLSENPHLVCEETANYLVIW.IDLEVEEKCALMEQ
Retrocopy DSEEQKEQKHKTFVEKHEKQIKHFAMLWRWDDSQKYLSENPHLVCEETANYLVIWGIDLEVEEKCALMEQ

Parental  VAHQTIVMQFILELAKSLKVDPRACFRQFFTKIKTADQQYMEGFTDELESFKERVRGRAKVRIEKAMKEY
          VAHQTIVMQFILELAKSLKVDPRACFRQFFTKIKTADQQYMEGFTDELESFKERVRG.AKVRIEKAMKEY
Retrocopy VAHQTIVMQFILELAKSLKVDPRACFRQFFTKIKTADQQYMEGFTDELESFKERVRGHAKVRIEKAMKEY

Parental  EEEERKKRLGPGGLDPVEVYEAL-PVELQKCFDIKDVQMLQDTISKMDPAEAKYHMQRCIDSGLWVPNAK
          EEEERKKRLGPGGLDPVEVYEAL.PVELQK.FDIKD.QMLQDTISKMDPAEAKYHM.RCIDS..WVPNAK
Retrocopy EEEERKKRLGPGGLDPVEVYEAL>PVELQK*FDIKDIQMLQDTISKMDPAEAKYHM*RCIDSAFWVPNAK

Parental  SEG--KKGEDEAPASDLVGEARKGRVEEKEKGNV
          ..G...KGEDEAPASDLVGEARKGRVEE.EKGNV
Retrocopy AAGGQEKGEDEAPASDLVGEARKGRVEEEEKGNV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1373 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1373 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000009437	1 retrocopy	retro_fcat_1338,
Homo sapiens	ENSG00000105401	1 retrocopy	retro_hsap_3396,
Gorilla gorilla	ENSGGOG00000008098	1 retrocopy	retro_ggor_2299,
Macropus eugenii	ENSMEUG00000002278	1 retrocopy	retro_meug_1373 ,
Macaca mulatta	ENSMMUG00000003111	1 retrocopy	retro_mmul_2113,
Pongo abelii	ENSPPYG00000009551	1 retrocopy	retro_pabe_2790,
Ictidomys tridecemlineatus	ENSSTOG00000015962	1 retrocopy	retro_itri_328,
Tursiops truncatus	ENSTTRG00000009560	1 retrocopy	retro_ttru_1073,