RetrogeneDB ID: retro_meug_1320

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold36730:13683..14490(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000008936
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000011537
• Aliases: None
• Description: None

Sequence

>retro_meug_1320
ACTACCACCGTCAGACAATACTCCACTTCTGGGTCCATGAAAGGCCTCTGTGGACTGGGTGGTGCTTCCTCCCTGGTGTC
TTCAGTCAGGGTTGGAGGGGCCTGCCTTGCTCTGAGCCTCCTGGGGGCCAGCAGCTGTGGGAACATGTCAGTTACCTCAT
GCCGTTTCACCTCCAGCTTGGGGGGCGGCTATTGTGGTGGCTACTGTGGTGGCTACAGCTGCAGCCTGGGAGGGGATTTT
GACACCAGCTATGGTGTAGGAGATGCCCTGCTGAGAGGGAATGAGAAGGAGACCATGCAGAACCTCAACTACCACCTGGC
CAACTACCTGGACAAGGTACGTGCACTGGAAGAGGCCAACACTAACTTGGAGCTCAAGATCCAGGACTGGTACGAGAAGC
AGGGTCCTGAGCCTGCCTGTGACTACAGCCCTTACTTCAAGACCATTGAGGACCTGAGGAACAAGATCCTGGCCGCCACC
ACTGACAATGCCAGCTTGGTCCTGCAGATCGACAATGCCCATCTGGCTGCAGATGACTTCCCTACCAAGTATGAGACTGA
ACTGAACTTGCTTATGAGTGTGGAGGCTGACATCAGTGGCCTAAGCAGAGTCCTGGATGAGTTGACCCTGGCGAGGGCTG
ACCTGGAGATGCAGATTGAGAACCTGAAGGAGGAGCTGGCCTACCTCAAGAAGAACCATGAGGAGGAAATGAATGCCCTT
CATGGGCAGGTTGGTGGGGATGTCAATGTGGTGATGGATGCAGCCCTGGGTGTGGACCTGAGTCACATCCTATCTGAGAT
GCGAGAA

Alignment

ORF - retro_meug_1320 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.13 %
• Parental protein coverage: 59.42 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TTTVRQYSTSGSMKGLC-TGGGSSRVSSVRVGGACLAPSLLGAGSCGNMSATSSRFTSSLGGSYGGGYGG
          TTTVRQYSTSGSMKGLC..GG.SS.VSSVRVGGACLA.SLLGA.SCGNMS.TS.RFTSSLGG........
Retrocopy TTTVRQYSTSGSMKGLCGLGGASSLVSSVRVGGACLALSLLGASSCGNMSVTSCRFTSSLGGXXXXXXXX

Parental  GYSCSLGGGFGTSYGVGDALLGGSEKETMQNLNDRLANYLDKVRALEEANTDLELKIRDWYKKQGPGPAR
          ..SCSLGG.F.TSYGVGDALL.G.EKETMQNLN..LANYLDKVRALEEANT.LELKI.DWY.KQGP.PA.
Retrocopy XXSCSLGGDFDTSYGVGDALLRGNEKETMQNLNYHLANYLDKVRALEEANTNLELKIQDWYEKQGPEPAC

Parental  DYSPYFKTIEDLRNKILAATIDNASLVLQIDNARLAADDFRTKYETELNLRMSVEADINGLRRVLDELTL
          DYSPYFKTIEDLRNKILAAT.DNASLVLQIDNA.LAADDF.TKYETELNL.MSVEADI.GL.RVLDELTL
Retrocopy DYSPYFKTIEDLRNKILAATTDNASLVLQIDNAHLAADDFPTKYETELNLLMSVEADISGLSRVLDELTL

Parental  ARADLEMQIENLKEELAYLKKNHEEEMNALRGQVGGDVNVEMDAAPGVDLSRILSEMRD
          ARADLEMQIENLKEELAYLKKNHEEEMNAL.GQVGGDVNV.MDAA.GVDLS.ILSEMR.
Retrocopy ARADLEMQIENLKEELAYLKKNHEEEMNALHGQVGGDVNVVMDAALGVDLSHILSEMRE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1320 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1320 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000011537	1 retrocopy	retro_meug_1320 ,
Macropus eugenii	ENSMEUG00000016158	3 retrocopies	retro_meug_1860, retro_meug_403, retro_meug_826,