RetrogeneDB ID: retro_meug_1132

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold30053:10680..11322(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KCTD15
• Ensembl ID: ENSMEUG00000016009
• Aliases: None
• Description: potassium channel tetramerization domain containing 15 [Source:HGNC Symbol;Acc:23297]

Sequence

>retro_meug_1132
TCTCTCTTGTCCAAGGAGAGAAGAAGCATGTCTCAACTCTCTCTAACACAGTCTCCAGTCTCTCCCTTGGCTATTCAGGG
AATCCCGCTCCCAGCTCAGCTCACCACTTCCAGCTCTCCTGTGCATATTGACGTGGTGGGACACATGTTCACCAGTGGTC
TGGATATCCTCACCAAGTATCCAGACTCGAGAATAAGCTGTCTATTCAATGACACAGAGCCCATCATACTAGACAGTCCA
AAGCAACATTATTTCATTGACTGGGATGCAGAGACATTCAGATATATCCTTAGCTTCCTAGGGATGTCCTAACTCCTGCT
GCCAGATGACTTTAAGTACTTCAGCTTCTTGTATGAAAGGGCACATTACTACCAACAGTAGCCAATGGTAAGGCAGCTAG
ACTGCTGGAAGCAGGAGCAGGAACAGTGGTTCGGTGGTCAGTCCTATGAATGTCCTGTGGTTCATGTGATACCCAACCTG
GGTGAGCACATTGCCCTCAGTGGGGAGAAGGCACTTATTGAGCAAGTCTTCCCGAGGACCAGTGATGTCAAGTGCAACTC
TGTCAATGCTGGATGGAACCAGGACCCCACACATGTCATCTGCTTCCCACTGAATGGCTACTGCTGTCTCAACTCCGTGA
GG

Alignment

ORF - retro_meug_1132 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.64 %
• Parental protein coverage: 93.45 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SVSSVERRSMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPDSRISRLFN
          S..S.ERRSMS.LSLT.SPVSPLA.QGIPLPAQLT.S..PVHIDV.GHM.TS.L..LTKYPDSRIS.LFN
Retrocopy SLLSKERRSMSQLSLTQSPVSPLAIQGIPLPAQLTTSSSPVHIDVVGHMFTSGLDILTKYPDSRISCLFN

Parental  GTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPMVRELDRWKQEQ
          .TEPI.LDS.KQHYFID.D.E.FRY.LSFL..S.LLLPDDFK.FS.LYE.A.YYQ..PMVR.LD.WKQEQ
Retrocopy DTEPIILDSPKQHYFIDWDAETFRYILSFLGMS*LLLPDDFKYFSFLYERAHYYQQ*PMVRQLDCWKQEQ

Parental  EQRRRGQACECLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRL
          EQ...GQ..EC.VV.V.P.LGE.IALSGEKALIE.VFP.T.DV.CNSVNAGWNQDPTHVI.FPLNGYC.L
Retrocopy EQWFGGQSYECPVVHVIPNLGEHIALSGEKALIEQVFPRTSDVKCNSVNAGWNQDPTHVICFPLNGYCCL

Parental  NSVQ
          NSV.
Retrocopy NSVR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1132 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1132 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000003335	1 retrocopy	retro_meug_693,
Macropus eugenii	ENSMEUG00000016009	1 retrocopy	retro_meug_1132 ,