RetrogeneDB ID: | retro_meug_1131 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold300343:275..575(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RAB24 | ||
| Ensembl ID: | ENSMEUG00000001728 | ||
| Aliases: | None | ||
| Description: | RAB24, member RAS oncogene family [Source:HGNC Symbol;Acc:9765] |
Retrocopy-Parental alignment summary:
>retro_meug_1131
ACCACCAGGGCTGCATTTGTAGTCAAGGTGATGTCTGTAGGAGACAGGACAATGATACTAGGCATTTGAGAAACAGCTGG
CACCAAGTGCTATGAGGCCATGAATCGAATTTATTATGGTGGTGTCAAGGCAATCACTGTCTGCTATGATCTTACTGACA
GTAGCACTTTTGAATGAGACAAATTCTATGTGAAGGAGTTTCAGAAGTTAGAGGAGAGGTGTTAGATTAACTTGTGTGGT
GCCAACTGTTACCTTCTGGAGGAAGAGTGAAGACTATGTGGGGTTGAATTGTCCAAAATA
ORF - retro_meug_1131 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.0 % |
| Parental protein coverage: | 69.93 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | TIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQSL |
| T..AAFV.KVMSVGDRT..LGI..TAG...YEAM.RIYY.G.KA..VCYDLTDSS.FE..KF.VKE.Q.L | |
| Retrocopy | TTRAAFVVKVMSVGDRTMILGI*ETAGTKCYEAMNRIYYGGVKAITVCYDLTDSSTFE*DKFYVKEFQKL |
| Parental | EESCQIYLCGTKSDLLEEDRRLRRVDFHDV |
| EE.C.I.LCG....LLEE..RL..V..... | |
| Retrocopy | EERC*INLCGANCYLLEEE*RLCGVELSKI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1131 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1131 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000001728 | 1 retrocopy |
retro_meug_1131 ,
|
| Macropus eugenii | ENSMEUG00000005614 | 1 retrocopy |