RetrogeneDB ID: retro_meug_1073

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold276644:444..937(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DUSP11
• Ensembl ID: ENSMEUG00000009370
• Aliases: None
• Description: dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) [Source:HGNC Symbol;Acc:3066]

Sequence

>retro_meug_1073
AGTTCTGAAGAAGAACTTGCCCCAGAAGAAGACTTTTCACCTTTGGATCTTGTTAGCAAACTATGAGAACAGAATGAAGA
GCTTGGATTGATCATTGATTTAACATACATTCAGCGCTATTATAAACCAGAGGAGCTGCCAGAGACTCTTCCTTACTTAA
AGATTTTTACCCTTGGACACCAGGTGCCTGATGAAGACACAGTTTTTAAATTCAAATGTGCTGTGAATAAATTTTGAAAG
AAAGCCAAGATAATGACAAACTTATGGAGTCCACTGTACATATGGTTTAAAAAGAACAGGATATCTTGTTTGCCGGTATT
CGACTGATGTTCAAGGCATGAAACCAAATGATACAATAGAATTGTTCAATACATGTCAAGGACATGCTATAGAAAGGTAG
AATTACATTGATGACCTCCAGCATGAACTAGTCAGAAAGAATGATGGTACTTTAAGGTCAGACCATTTTGAAGAATTATC
ATTTATCAAAAGG

Alignment

ORF - retro_meug_1073 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.64 %
• Parental protein coverage: 65.86 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SFEDKLAPEERFSPLDLVNKIREQNEELGLIIDLTYTQRYYKPEELPEALPYLKIFTVGHQVPDDDTIFK
          S.E..LAPEE.FSPLDLV.K..EQNEELGLIIDLTY.QRYYKPEELPE.LPYLKIFT.GHQVPD.DT.FK
Retrocopy SSEEELAPEEDFSPLDLVSKL*EQNEELGLIIDLTYIQRYYKPEELPETLPYLKIFTLGHQVPDEDTVFK

Parental  FKCAVNKF-LKENQDNDKLI-GVHCTHGLNRTGYLVCRYLIDVQGMKPNDAIELFNRCRGHAIERQNYID
          FKCAVNKF.LKE.QDNDKL..GVHCT.GL.RTGYLVCRY..DVQGMKPND.IELFN.C.GHAIER.NYID
Retrocopy FKCAVNKF<LKESQDNDKLM<GVHCTYGLKRTGYLVCRYSTDVQGMKPNDTIELFNTCQGHAIER*NYID

Parental  DLQHGPVRKN-WYFRSEHFEESSFIRK
          DLQH..VRKN....RS.HFEE.SFI..
Retrocopy DLQHELVRKNDGTLRSDHFEELSFIKR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1073 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1073 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000012041	2 retrocopies	retro_chof_2647, retro_chof_932,
Echinops telfairi	ENSETEG00000005304	1 retrocopy	retro_etel_487,
Macropus eugenii	ENSMEUG00000009370	1 retrocopy	retro_meug_1073 ,
Tupaia belangeri	ENSTBEG00000014600	1 retrocopy	retro_tbel_1984,
Tursiops truncatus	ENSTTRG00000015444	5 retrocopies	retro_ttru_1220, retro_ttru_1512, retro_ttru_1627, retro_ttru_1746, retro_ttru_1877,