RetrogeneDB ID: | retro_macu_96 | ||
Retrocopy location | Organism: | Wild banana (Musa acuminata) | |
| Coordinates: | chrUn_random:98243372..98243725(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | GSMUA_Achr6G25970_001 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_macu_96
ATGGCGCCGAGTTTCGGTCGCCTTGGGATGGCCACGAACATTCCATCGTCCACATACAAGCCCATGCATGAACACCGAAT
TCTTTGAGTTAGCAATTCCCCTCACCTCTGTGAGCTTTGCATAACTCTTTCGGTCATTGAGTAACTCATTCCACCTTGGA
TGGTCTCATCCTTTACCAAGTGCCTCGCTTGCCTTGAGCACCATCAAGTGTGGTTGTCAACGTTGAGCCGTAGCTCAAAC
TCAGCCATCCCAACCTTTGTGTGCTCCGCATTCTTCTAAGCTTGTCTATTCTCGTGGTGCCTCTTGCGCAAAGGGTTGGC
CATTCCTCTTAATTCCAATCTCAGATGTCCGCT
ORF - retro_macu_96 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 56.2 % |
| Parental protein coverage: | 62.18 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MASSFSLLGTATDSPSFAYKPLHEYLILQVSNSSHLCELCTTLKVAKQPIPPCMVLFFAKCPACLEHHQV |
| MA.SF..LG.AT..PS..YKP.HE..IL.VSNS.HLCELC.TL.V....IPP.MV..F.KC.ACLEHHQV | |
| Retrocopy | MAPSFGRLGMATNIPSSTYKPMHEHRIL*VSNSPHLCELCITLSVIE*LIPPWMVSSFTKCLACLEHHQV |
| Parental | WLPMLSYCSNSTIITFVSYVSF-LVPSLLVFVVPITRRGANTSDFNRHSGA |
| WL..LS..SNS.I.TFV....F.L..S.LV..VP...R....S.F.....A | |
| Retrocopy | WLSTLSRSSNSAIPTFVCSAFF<LSLSILV--VPLAQRVGHSS*FQSQMSA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Musa acuminata was not studied using RNA-Seq expression data.
Musa acuminata was not studied using ChIP-Seq data.
Musa acuminata was not studied using EST data.
Musa acuminata was not studied using FANTOM5 data.
retro_macu_96 was not experimentally validated.
Retrocopy orthology:
Musa acuminata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 33 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Musa acuminata | GSMUA_Achr6G25970_001 | 33 retrocopies |
retro_macu_103, retro_macu_104, retro_macu_105, retro_macu_107, retro_macu_12, retro_macu_15, retro_macu_37, retro_macu_38, retro_macu_39, retro_macu_40, retro_macu_42, retro_macu_48, retro_macu_55, retro_macu_56, retro_macu_57, retro_macu_59, retro_macu_63, retro_macu_64, retro_macu_66, retro_macu_72, retro_macu_75, retro_macu_76, retro_macu_77, retro_macu_79, retro_macu_80, retro_macu_83, retro_macu_84, retro_macu_86, retro_macu_88, retro_macu_9, retro_macu_91, retro_macu_93, retro_macu_96 ,
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