RetrogeneDB ID: | retro_itri_953 | ||
Retrocopy location | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
| Coordinates: | JH393348.1:8278368..8278719(-) | ||
| Located in intron of: | ENSSTOG00000028127 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PTGES | ||
| Ensembl ID: | ENSSTOG00000004909 | ||
| Aliases: | None | ||
| Description: | prostaglandin E synthase [Source:HGNC Symbol;Acc:9599] |
Retrocopy-Parental alignment summary:
>retro_itri_953
CTCCCCCCAAGCCTGGCAATGGTGAGTGGGCAGGTGTTCTCAGCCTTCATGCTTTGTAGTACATTACTGGTCATCAAGAT
GTATGTGGTGGCAGTCATCACAGGCCAAGTGAGGCTGCCGAAGAAGGCTTTTGCCAACCCTAAGGATGATTTGAGACAAG
GAGACCTTCAGTATTGCTGGAGCTACTCTGATGTGCAATTTTGCCTCAGAACCCACTGGAATGACGTGGAGACTATCTAC
CTTTTCTTCTTCCTGGGCCTTGTCTATACTTTCCTGGGGCCTGACCCTTTTCTTCATCTGAATGTACTTCTCATATTCCT
CCTGGGCCTTGTATTGCACACTGTGGCCTAC
ORF - retro_itri_953 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 69.23 % |
| Parental protein coverage: | 76.47 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LTPSLATVSGPTLPAFLLCSTLLVIKMYVVAVITGQVRLRKKAFANPEDALRHGGLQFCRSDPDVERCLR |
| L.PSLA.VSG....AF.LCSTLLVIKMYVVAVITGQVRL.KKAFANP.D.LR.G.LQ.C.S..DV..CLR | |
| Retrocopy | LPPSLAMVSGQVFSAFMLCSTLLVIKMYVVAVITGQVRLPKKAFANPKDDLRQGDLQYCWSYSDVQFCLR |
| Parental | AHRNDMETIYPFLFLGLVYSFLGPHPVVAWAHFLIFLLGRLVHTWAY |
| .H.ND.ETIY.F.FLGLVY.FLGP.P.......LIFLLG...HT.AY | |
| Retrocopy | THWNDVETIYLFFFLGLVYTFLGPDPFLHLNVLLIFLLGLVLHTVAY |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_953 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_953 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ictidomys tridecemlineatus | ENSSTOG00000004909 | 1 retrocopy |
retro_itri_953 ,
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