RetrogeneDB ID: | retro_gmor_32 | ||
Retrocopy location | Organism: | Cod (Gadus morhua) | |
| Coordinates: | contig513746:602..1019(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSGMOG00000003983 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_gmor_32
ACATCGGCCGCTGTGCCCCGGGTGGCTTTCACTGCCACACTGGGCCAGCGCCTCGGCCCCGTCCCCATTGACATGCCGGT
CAAGTACCAGGGGATCATCTCCAACATGGGCAACGGCTACAACCCGGCCACGGGCATCTTCACCGCCCGGGTGTCCGGCA
TGTACTACTTCAGCTACACCATGTACAACAACAATAACAGTCTAGTGGCCAACTCGGTGATGTCACTGATGAAGAACAGC
CAGCTGATGGTGTCCACCTGGGACATAGGGGATGACGGTAACGACAGTGCCACCAACACCGCCGTGCTGCAACTGGAGGC
CGGAGACAACGTCTACATCAAGCTCTACGCCAACCGCGAGTTATTTGACGATGGCATGCACTACAACACCTTCAGCGGCT
TCCTGCTCTTCCCTCTG
ORF - retro_gmor_32 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 74.29 % |
| Parental protein coverage: | 88.46 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | TSAAQPRVAFSTGLGLPLGPLHIDTTVRYLRIFSNMGNGYNPATGIFTARVSGMYYFRYTMHNNNPQ--S |
| TSAA.PRVAF...LG..LGP..ID..V.Y..I.SNMGNGYNPATGIFTARVSGMYYF.YTM.NNN..... | |
| Retrocopy | TSAAVPRVAFTATLGQRLGPVPIDMPVKYQGIISNMGNGYNPATGIFTARVSGMYYFSYTMYNNNNSLVA |
| Parental | NSVMSLMKNSQRMVSTWDTSGSDDNDTATNAAVLQLEEGDNVYTRLYANRQIYDDGANYNTFSGFLLFPL |
| NSVMSLMKNSQ.MVSTWD..G.D.ND.ATN.AVLQLE.GDNVY..LYANR...DDG..YNTFSGFLLFPL | |
| Retrocopy | NSVMSLMKNSQLMVSTWDI-GDDGNDSATNTAVLQLEAGDNVYIKLYANRELFDDGMHYNTFSGFLLFPL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Gadus morhua was not studied using RNA-Seq expression data.
Gadus morhua was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_gmor_32 retrocopy.
Gadus morhua was not studied using FANTOM5 data.
retro_gmor_32 was not experimentally validated.
Retrocopy orthology:
Gadus morhua does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gadus morhua | ENSGMOG00000003983 | 3 retrocopies |
retro_gmor_22, retro_gmor_26, retro_gmor_32 ,
|