RetrogeneDB ID: | retro_gmor_29 | ||
Retrocopy location | Organism: | Cod (Gadus morhua) | |
| Coordinates: | contig270014:1612..1873(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSGMOG00000005412 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_gmor_29
ATGTAAACTCTTGATTCTCATGGGGATGATTACAGGAATTCTTACTTGACTATACATCTAGAGGATGAGTCCACTGTCCC
TCTAGAATCGGCAACTGGACAGGAGGGGGACCGGATTAATGGTGCGTCTGGTTCTTCTGGTGCAGCACACCATGGAGCCG
GACCAAAGAAGAGGAGACATCGCATTCCAAAGCAGGAGAAGGATAAAGGCACACAGACTGAGCCTGATATCCCAATGTTG
GATGAATCACCCTTGGGGGAA
ORF - retro_gmor_29 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 95.4 % |
| Parental protein coverage: | 90.62 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MKTLDSHGDDYRNSYLTIHLEDESTVPLESATGQEGDRINGASGSSGAAHHGAGPKKRRHRIPKQEKDKD |
| M.TLDSHGDDYRNSYLTIHLEDESTVPLESATGQEGDRINGASGSSGAAHHGAGPKKRRHRIPKQEKDK. | |
| Retrocopy | M*TLDSHGDDYRNSYLTIHLEDESTVPLESATGQEGDRINGASGSSGAAHHGAGPKKRRHRIPKQEKDKG |
| Parental | PQTEPDIPMLDESPFGE |
| .QTEPDIPMLDESP.GE | |
| Retrocopy | TQTEPDIPMLDESPLGE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Gadus morhua was not studied using RNA-Seq expression data.
Gadus morhua was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_gmor_29 retrocopy.
Gadus morhua was not studied using FANTOM5 data.
retro_gmor_29 was not experimentally validated.
Retrocopy orthology:
Gadus morhua does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gadus morhua | ENSGMOG00000005412 | 1 retrocopy |
retro_gmor_29 ,
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