RetrogeneDB ID: | retro_gmax_36 | ||
Retrocopy location | Organism: | Soybean (Glycine max) | |
| Coordinates: | 17:38043251..38043649(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | GLYMA09G04840 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_gmax_36
ACATTAGCACATTGCTTAATTGCACTCTGGACTTACTATGGAATCATAAAGGACGGAGAGTACCTCGTGATCACTGTTAA
TGGCTTTGGCTTGTGGTGAAGACAATCTACATTATTCTATTTCTCATATAGGCAACAAAAGGGATAAGAGGTAGGACTGT
CATTTTCGCTTTCATTTTGGATGTTGTAATCTTGGCAGCAACTAGTTACTACTCAATTAGCATTGCAAAGAGAGAGTTGT
AATGGTGTTGTTGGTGTTATAGGAGTAGGCTTGAACATTGTTAGGTATTCCTCACCTCTTTCTGTCATGAAAACGTGACT
GCAGTATATGCTATGCCATTCTTGCTTCTTTTTTTTTTCCTTTTCTTATTTAAAAAAAAATCTACAAGAATTTTGTTT
ORF - retro_gmax_36 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 56.2 % |
| Parental protein coverage: | 54.1 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | TLLNC--SLWTYYGIIKAGEYLVATVNGFGI-LMETIYIILFLIYAPKGIRGRTAILALILDVVILTAI- |
| TL..C...LWTYYGIIK.GEYLV.TVNGFG.....TIYIILFLI.A.KGIRGRT.I.A.ILD.V...A.. | |
| Retrocopy | TLAHCLIALWTYYGIIKDGEYLVITVNGFGL<VVKTIYIILFLI*ATKGIRGRTVIFAFILD-VVILAA> |
| Parental | IIITQLALEGETRSGAVGVMGAGLNIVMYSSPLSVMKT-VVTTKSVEYMPFLLSFFFFFNGAVWLLY |
| ...TQLAL..E...G.VGV.G.GLNIV.YSSPLSVMKT.V...............F.F.......L. | |
| Retrocopy | LVTTQLALQRESCNGVVGVIGVGLNIVRYSSPLSVMKT<VTAVYAMPFLLXXXXLFLFXXXSTRILF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Glycine max was not studied using RNA-Seq expression data.
Glycine max was not studied using ChIP-Seq data.
Glycine max was not studied using EST data.
Glycine max was not studied using FANTOM5 data.
retro_gmax_36 was not experimentally validated.
Retrocopy orthology:
Glycine max does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Glycine max | GLYMA09G04840 | 1 retrocopy |
retro_gmax_36 ,
|