RetrogeneDB ID: | retro_gmax_3 | ||
Retrocopy location | Organism: | Soybean (Glycine max) | |
| Coordinates: | 16:9381643..9384124(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | GLYMA16G09490 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | GLYMA13G17240 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_gmax_3
ATGTTTCCAATGGGTTCTTCTTCGTGGGTTGGGATTGCCTTATTTTTCTTAGCTTTCACAGCCTCATGCTTTGCAACAGA
GGTAACTTATGATGCACGTTCTCTCATTATTAATGGAGAAAGACGTGTTATTTTTTCTGGTGCGGTCCATTATCCTCGAA
GCACAGTGCAGATGTGGCCTGACATCATACAAAAGGCAAAGGATGGAGGGCTTGATGCCATTGAAAGTTATGTATTTTGG
GACCGTCATGAACCCGTTCGACGTGAATATGATTTCTCAGGAAATTTAGATTTTATCAAATTTTTTCAGATAATCCAAGA
GGCTGGGTTGTATGCCATTCTAAGGATTGGTCCATATGTTTGTGCCGAATGGAACTTTGGAGGCTTCCCATTGTGGCTAC
ACAATATGCCAGGGATTGAGCTGAGAACAGATAACCCAATTTACAAGAACGAAATGCAAATTTTCACTACAAAGATTGTG
AACATGGCTAAAGAAGCAAAGTTGTTTGCATCACAAGGAGGACCCATTATTCTTGCTCAAATTGAAAATGAATATGGAAA
CATTATGACGGATTACGGAGAGGCAGGGAAGACATATATCAAATGGTGTGCACAAATGGCTTTGGCACAAAATATCGGTG
TCCCTTGGATCATGTGTCAGCAACACGATGCTCCCCAACCTATGATCAACACTTGCAATGGGCACTATTGTGACAGTTTT
CAACCCAATAACCCTAAAAGTCCCAAAATGTTCACTGAAAATTGGATTGGATGGTTCCAAAAATGGGGCGAGAGGGTGCC
TCACAGAAGTGCTGAAGATTCAGCTTTCTCAGTTGCACGTTTTTTCCAAAATGGAGGGATATTGAATAATTATTACATGT
ACCATGGAGGAACTAACTTTGGTCGCACGGCAGGAGGCCCGTATATGACAACATCTTACGAGTATGATGCGCCACTTGAT
GAGTATGGCAATTTGAATCAACCCAAATGGGGACATCTTAAGCAACTTCATGCAGCAATAAAATTAGGGGAAAAAATCAT
CACCAACGGGACAAGGACGGACAAGGATTTTGGCAATGAAGTCACATTAACAACATATACCCACACAAATGGGGAAAGGT
TTTGTTTCTTGAGCAATACAAACGATAGCAAGGATGCAAATGTTGACTTGCAACAAGATGGAAACTACTTTCTCCCTGCT
TGGTCTGTGACCATTCTTGATGGTTGCAACAAAGAAGTTTTCAACACTGCAAAGGTTAATAGTCAAACCTCGATAATGGT
GAAGAAGAGTGATGATGCTTCTAATAAGCTCACTTGGGCATGGATACCAGAGAAAAAGAAAGACACCATGCATGGAAAGG
GCAACTTCAAGGTAAATCAACTTCTTGAGCAGAAGGAGCTAACTTTCGATGTCAGTGACTACTTGTGGTACATGACTAGT
GTTGATATCAATGACACTTCCATTTGGAGCAATGCAACTCTTCGTGTGAACACTAGGGGGCATACCCTTCGTGCTTATGT
TAATGGAAGGCATGTAGGATACAAATTTAGCCAATGGGGAGGCAATTTCACATATGAGAAATACGTTTCTTTGAAGAAGG
GACTAAACGTCATAACTTTGCTTAGTGCCACTGTTGGGCTTCCAAACTATGGTGCAAAGTTCGATAAGATTAAAACTGGT
ATAGCAGGTGGCCCTGTTCAATTAATTGGAAACAATAATGAGACCATAGATTTGTCAACCAACCTTTGGTCTTACAAGAT
AGGTTTGAATGGCGAAAAAAAGCGTCTATATGATCCGCAACCACGCATTGGTGTATCATGGCGCACTAATTCACCTTATC
CTATTGGGAGATCCTTGACTTGGTATAAGGCTGACTTTGTAGCTCCTTCCGGAAATGACCCTGTGGTTGTGGACTTGCTA
GGCTTGGGTAAAGGAGAAGCTTGGGTGAATGGACAAAGCATTGGTCGTTATTGGACTTCTTGGATTACTGCTACCAATGG
GTGCAGTGACACTTGTGACTACCGTGGAAAATACGTACCGGCTCAAAAATGCAACACCAATTGTGGCAATCCATCACAAA
GGTGGTACCATGTACCAAGGTCATTCTTGAAAAATGACAAGAACACATTGGTTTTGTTCGAAGAAATAGGTGGAAATCCT
CAAAATGTTTCCTTTCAAACCGTGATAACTGGAACTATTTGTGCCCAAGTCCAGGAAGGTGCATTGTTAGAGCTATCATG
CCAAGGTGGGAAAACAATCTCACAGATCCAATTTTCTAGCTTTGGAAATCCAACAGGTAACTGTGGTTCATTCAAAAAAG
GTACATGGGAAGCTACTGATGGCCAATCTGTGGTGGAAGCTGCATGCGTAGGGAGGAATAGTTGTGGATTTATGGTGACA
AAAGAAGCATTTGGTGTAGCAATTGGTCCAATGAATGTTGACGAGCGTGTAGCAAGATTAGCTGTCCAAGCAACTTGTTA
A
ORF - retro_gmax_3 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 57.83 % |
| Parental protein coverage: | 97.22 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | AVEVSHDGRAIIIDGKRRVLLSGSIHYPRSTPEMWPELIQKAKEGGLDAIETYVFWNAHEPSRRVYDFSG |
| A.EV..D.R..II.G.RRV..SG..HYPRST..MWP..IQKAK.GGLDAIE.YVFW..HEP.RR.YDFSG | |
| Retrocopy | ATEVTYDARSLIINGERRVIFSGAVHYPRSTVQMWPDIIQKAKDGGLDAIESYVFWDRHEPVRREYDFSG |
| Parental | NNDIIRFLKTIQESGLYGVLRIGPYVCAEWNYGGIPVWVHNLPDVEIRTANSVYMNEMQNFTTLIVDMVK |
| N.D.I.F...IQE.GLY..LRIGPYVCAEWN.GG.P.W.HN.P..E.RT.N..Y.NEMQ.FTT.IV.M.K | |
| Retrocopy | NLDFIKFFQIIQEAGLYAILRIGPYVCAEWNFGGFPLWLHNMPGIELRTDNPIYKNEMQIFTTKIVNMAK |
| Parental | KEKLFASQGGPIILTQIENEYGNVISHYGDAGKAYMNWCANMAESLNVGVPWIMCQESDAPQSMINTCNG |
| ..KLFASQGGPIIL.QIENEYGN....YG.AGK.Y..WCA.MA...N.GVPWIMCQ..DAPQ.MINTCNG | |
| Retrocopy | EAKLFASQGGPIILAQIENEYGNIMTDYGEAGKTYIKWCAQMALAQNIGVPWIMCQQHDAPQPMINTCNG |
| Parental | FYCDNFEPNNPSSPKMWTENWVGWFKNWGGRDPHRTAEDVAFAVARFFQTGGTFQNYYMYHGGTNFDRTA |
| .YCD.F.PNNP.SPKM.TENW.GWF..WG.R.PHR.AED.AF.VARFFQ.GG...NYYMYHGGTNF.RTA | |
| Retrocopy | HYCDSFQPNNPKSPKMFTENWIGWFQKWGERVPHRSAEDSAFSVARFFQNGGILNNYYMYHGGTNFGRTA |
| Parental | GGPYITTSYDYDAPLDEYGNIAQPKWGHLKELHNVLKSMEETLTSGNVSETDFGNSVKATIYA-TNGSSS |
| GGPY.TTSY.YDAPLDEYGN..QPKWGHLK.LH...K..E...T.G.....DFGN.V..T.Y..TNG... | |
| Retrocopy | GGPYMTTSYEYDAPLDEYGNLNQPKWGHLKQLHAAIKLGEKIITNGTRTDKDFGNEVTLTTYTHTNGERF |
| Parental | CFLSSTNTTTDATLTF-RGKNYTVPAWSVSILPDCEHEEYNTAKVNVQTSVMVKENSKAEEEATALKWVW |
| CFLS.TN...DA........NY..PAWSV.IL..C..E..NTAKVN.QTS.MVK...K.......L.W.W | |
| Retrocopy | CFLSNTNDSKDANVDLQQDGNYFLPAWSVTILDGCNKEVFNTAKVNSQTSIMVK---KSDDASNKLTWAW |
| Parental | RSENIDNALHGKSNVSANRLLDQKDAANDASDYLWYMTKLHVKHDDPVWGENMTLRINSSGHVIHAFVNG |
| ..E......HGK.N...N.LL.QK....D.SDYLWYMT......D...W..N.TLR.N..GH...A.VNG | |
| Retrocopy | IPEKKKDTMHGKGNFKVNQLLEQKELTFDVSDYLWYMTSVDI-NDTSIW-SNATLRVNTRGHTLRAYVNG |
| Parental | EHIGSHWATYGIHNDKFEPKIKLKHGTNTISLLSVTVGLQNYGAFFDTWHAGLV-EPIELVSVKGDETII |
| .H.G......G..N...E....LK.G.N.I.LLS.TVGL.NYGA.FD....G....P..L......ETI. | |
| Retrocopy | RHVGYKFSQWG-GNFTYEKYVSLKKGLNVITLLSATVGLPNYGAKFDKIKTGIAGGPVQLIG-NNNETI- |
| Parental | KNLSSNKWSYKVGLHGWDHKLFSDDSPFAAPNKWESEKLPTDRMLTWYKTTFNAPLGTDPVVVDLQGMGK |
| ..LS.N.WSYK.GL.G....L..D..P............P..R.LTWYK..F.AP.G.DPVVVDL.G.GK | |
| Retrocopy | -DLSTNLWSYKIGLNGEKKRLY-DPQPRIGVSWRTNSPYPIGRSLTWYKADFVAPSGNDPVVVDLLGLGK |
| Parental | GYAWVNGQNIGRIWPSYNAEEDGCSDEPCDYRGEYTDS-KCVTNCGKPTQRWYHVPRSYLKDGANNLVLF |
| G.AWVNGQ.IGR.W.S......GCSD..CDYRG.Y....KC.TNCG.P.QRWYHVPRS.LK...N.LVLF | |
| Retrocopy | GEAWVNGQSIGRYWTSWITATNGCSD-TCDYRGKYVPAQKCNTNCGNPSQRWYHVPRSFLKNDKNTLVLF |
| Parental | AELGGNPSQVNFQTVVVGTVCANAYENKTLELSCQGRK-ISAIKFASFGDPEGVCGAFTNGSCESKSNAL |
| .E.GGNP..V.FQTV..GT.CA...E...LELSCQG.K.IS.I.F.SFG.P.G.CG.F..G..E...... | |
| Retrocopy | EEIGGNPQNVSFQTVITGTICAQVQEGALLELSCQGGKTISQIQFSSFGNPTGNCGSFKKGTWEA-TDGQ |
| Parental | SIVQKACVGKQACSFDVSEKTFGPTACG--NVAKRLAVEAV |
| S.V..ACVG...C.F.V....FG..A.G..NV..R.A..AV | |
| Retrocopy | SVVEAACVGRNSCGFMVTKEAFG-VAIGPMNVDERVARLAV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Glycine max was not studied using RNA-Seq expression data.
Glycine max was not studied using ChIP-Seq data.
Glycine max was not studied using EST data.
Glycine max was not studied using FANTOM5 data.
retro_gmax_3 was not experimentally validated.
Retrocopy orthology:
Glycine max does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Glycine max | GLYMA13G17240 | 1 retrocopy |
retro_gmax_3 ,
|